Gene annotation
Transcriptome id Sobic.003G252900.3
Synonym Sb03g030830
Functional annotation AAA-type ATPase family protein, putative, expressed
UniProt A0A1W0VYX7
Pfam PF05496
Panther DB PTHR23074 PTHR23074:SF92
NCBI CDD KOG0738; AAA+-type ATPase
KEGG Orthology K07767; katanin p60 ATPase-containing subunit A1
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT2G34560 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os01g48270.1 : AAA-type ATPase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a038791
Brachypodium KQK09811 , KQK09812 , KQK09146
Barley HORVU3Hr1G061800.12 , HORVU3Hr1G061800.13 , HORVU3Hr1G061800.10 , HORVU3Hr1G061800.11 , HORVU3Hr1G061800.16 , HORVU3Hr1G061800.17 , HORVU3Hr1G061800.14 , HORVU3Hr1G061800.15 , HORVU3Hr1G061800.18 , HORVU3Hr1G061800.19 , HORVU3Hr1G061800.8 , HORVU3Hr1G061800.9 , HORVU3Hr1G061800.1 , HORVU3Hr1G061800.2 , HORVU3Hr1G061800.3 , HORVU3Hr1G061800.4 , HORVU3Hr1G061800.5 , HORVU3Hr1G061800.6 , HORVU3Hr1G061800.7
Wheat TraesCS3D02G271500 , TraesCS3A02G271900 , TraesCS3B02G305600 , TraesCS3B02G305600
Populus -


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cDNA sequences
Sobic.003G252900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G058700 metal cation transporter, putative, expressed -
2 Sobic.003G312400 dymeclin, putative, expressed -
3 Sobic.003G126800 cysteine proteinase inhibitor precursor protein, putative, expressed -
4 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
5 Sobic.003G410400 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.001G294600 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
7 Sobic.006G129000 ATP/GTP binding protein, putative, expressed -
8 Sobic.009G182200 domain of unknown function, DUF250 domain containing protein, expressed -
9 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
10 Sobic.003G092700 xylosyltransferase, putative, expressed -
11 Sobic.002G184900 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
12 Sobic.001G480800 Protein strubbelig-receptor family 7(PubMedID : 31721651)@STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed -
13 Sobic.001G168500 serpin domain containing protein, putative, expressed K13963: serpin B
14 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
15 Sobic.002G159900 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
16 Sobic.008G119400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
17 Sobic.002G385300 helix-loop-helix DNA-binding domain containing protein, expressed -
18 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
19 Sobic.004G010700 expressed protein -
20 Sobic.003G428200 MEMO1, putative, expressed K06990: MEMO1 family protein


Gene co-expression network
sample Sobic003G252900 Sobic003G252900 Sobic008G058700 Sobic008G058700 Sobic003G252900--Sobic008G058700 Sobic003G312400 Sobic003G312400 Sobic003G252900--Sobic003G312400 Sobic003G126800 Sobic003G126800 Sobic003G252900--Sobic003G126800 Sobic003G319000 Sobic003G319000 Sobic003G252900--Sobic003G319000 Sobic003G410400 Sobic003G410400 Sobic003G252900--Sobic003G410400 Sobic001G294600 Sobic001G294600 Sobic003G252900--Sobic001G294600 Sobic006G129000 Sobic006G129000 Sobic003G252900--Sobic006G129000 Sobic009G182200 Sobic009G182200 Sobic003G252900--Sobic009G182200 Sobic010G088300 Sobic010G088300 Sobic003G252900--Sobic010G088300 Sobic008G058700--Sobic003G410400 Sobic004G083000 Sobic004G083000 Sobic008G058700--Sobic004G083000 Sobic008G058700--Sobic003G126800 Sobic008G058700--Sobic003G252900 Sobic009G070200 Sobic009G070200 Sobic008G058700--Sobic009G070200 Sobic003G043400 Sobic003G043400 Sobic008G058700--Sobic003G043400 Sobic002G044000 Sobic002G044000 Sobic008G058700--Sobic002G044000 Sobic003G358300 Sobic003G358300 Sobic008G058700--Sobic003G358300 Sobic009G160200 Sobic009G160200 Sobic008G058700--Sobic009G160200 Sobic003G312400--Sobic003G252900 Sobic003G312400--Sobic003G410400 Sobic003G312400--Sobic003G319000 Sobic004G168300 Sobic004G168300 Sobic003G312400--Sobic004G168300 Sobic003G092700 Sobic003G092700 Sobic003G312400--Sobic003G092700 Sobic010G168900 Sobic010G168900 Sobic003G312400--Sobic010G168900 Sobic003G312400--Sobic006G129000 Sobic010G059700 Sobic010G059700 Sobic003G312400--Sobic010G059700 Sobic002G297600 Sobic002G297600 Sobic003G312400--Sobic002G297600 Sobic003G126800--Sobic008G058700 Sobic003G126800--Sobic003G252900 Sobic003G126800--Sobic010G088300 Sobic003G031200 Sobic003G031200 Sobic003G126800--Sobic003G031200 Sobic003G126800--Sobic009G070200 Sobic004G297300 Sobic004G297300 Sobic003G126800--Sobic004G297300 Sobic003G126800--Sobic003G358300 Sobic001G066700 Sobic001G066700 Sobic003G126800--Sobic001G066700 Sobic003G039200 Sobic003G039200 Sobic003G126800--Sobic003G039200 Sobic001G196100 Sobic001G196100 Sobic003G319000--Sobic001G196100 Sobic003G319000--Sobic003G092700 Sobic003G319000--Sobic009G182200 Sobic001G026600 Sobic001G026600 Sobic003G319000--Sobic001G026600 Sobic003G319000--Sobic003G252900 Sobic003G319000--Sobic003G312400 Sobic001G418000 Sobic001G418000 Sobic003G319000--Sobic001G418000 Sobic003G319000--Sobic003G410400 Sobic003G023500 Sobic003G023500 Sobic003G319000--Sobic003G023500 Sobic003G410400--Sobic008G058700 Sobic003G410400--Sobic003G043400 Sobic003G410400--Sobic003G312400 Sobic009G201800 Sobic009G201800 Sobic003G410400--Sobic009G201800 Sobic003G410400--Sobic003G252900 Sobic003G410400--Sobic003G319000 Sobic003G410400--Sobic003G039200 Sobic003G410400--Sobic003G031200 Sobic004G010700 Sobic004G010700 Sobic003G410400--Sobic004G010700 Sobic003G358200 Sobic003G358200 Sobic001G294600--Sobic003G358200 Sobic001G294600--Sobic003G252900 Sobic001G294600--Sobic008G058700 Sobic006G107400 Sobic006G107400 Sobic001G294600--Sobic006G107400 Sobic005G084900 Sobic005G084900 Sobic001G294600--Sobic005G084900 Sobic001G067000 Sobic001G067000 Sobic001G294600--Sobic001G067000 Sobic001G168500 Sobic001G168500 Sobic001G294600--Sobic001G168500 Sobic001G379000 Sobic001G379000 Sobic001G294600--Sobic001G379000 Sobic006G164000 Sobic006G164000 Sobic001G294600--Sobic006G164000 Sobic006G129000--Sobic003G312400 Sobic006G129000--Sobic003G252900 Sobic004G056400 Sobic004G056400 Sobic006G129000--Sobic004G056400 Sobic003G152700 Sobic003G152700 Sobic006G129000--Sobic003G152700 Sobic006G129000--Sobic001G418000 Sobic010G265900 Sobic010G265900 Sobic006G129000--Sobic010G265900 Sobic003G326800 Sobic003G326800 Sobic006G129000--Sobic003G326800 Sobic001G505500 Sobic001G505500 Sobic006G129000--Sobic001G505500 Sobic004G075100 Sobic004G075100 Sobic006G129000--Sobic004G075100 Sobic009G182200--Sobic003G319000 Sobic009G171100 Sobic009G171100 Sobic009G182200--Sobic009G171100 Sobic003G217100 Sobic003G217100 Sobic009G182200--Sobic003G217100 Sobic003G348200 Sobic003G348200 Sobic009G182200--Sobic003G348200 Sobic010G201388 Sobic010G201388 Sobic009G182200--Sobic010G201388 Sobic001G441000 Sobic001G441000 Sobic009G182200--Sobic001G441000 Sobic004G123000 Sobic004G123000 Sobic009G182200--Sobic004G123000 Sobic003G224300 Sobic003G224300 Sobic009G182200--Sobic003G224300 Sobic006G013000 Sobic006G013000 Sobic009G182200--Sobic006G013000 Sobic010G088300--Sobic003G031200 Sobic010G088300--Sobic003G043400 Sobic001G199300 Sobic001G199300 Sobic010G088300--Sobic001G199300 Sobic001G434400 Sobic001G434400 Sobic010G088300--Sobic001G434400 Sobic002G423800 Sobic002G423800 Sobic010G088300--Sobic002G423800 Sobic004G137900 Sobic004G137900 Sobic010G088300--Sobic004G137900 Sobic004G204800 Sobic004G204800 Sobic010G088300--Sobic004G204800 Sobic010G088300--Sobic002G044000 Sobic010G088300--Sobic003G126800
Octagon: transcription factors


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