Gene annotation
Transcriptome id Sobic.002G385300.1
Synonym Sb02g040140, PYE
Functional annotation helix-loop-helix DNA-binding domain containing protein, expressed
UniProt C5X366
Pfam PF00010
Panther DB PTHR23042 PTHR23042:SF62
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G47640 : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os07g43530.2 : helix-loop-helix DNA-binding domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048844
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G385300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G390400 expressed protein -
2 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -
3 Sobic.008G111700 expressed protein -
4 Sobic.008G116600 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, putative, expressed -
5 Sobic.001G498400 - K18655: DDX19, ATP-dependent RNA helicase DDX19/DBP5
6 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
7 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
8 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
9 Sobic.002G062500 aldehyde dehydrogenase, putative, expressed K00140: mmsA, iolA, malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase
10 Sobic.003G407900 OsFBX32 - F-box domain containing protein, expressed -
11 Sobic.009G169100 zinc finger, C3HC4 type domain containing protein, expressed -
12 Sobic.003G062400 PHD finger protein, putative, expressed -
13 Sobic.003G192000 3-5 exonuclease/ nucleic acid binding protein, putative, expressed K18740: EXD1, exonuclease 3'-5' domain-containing protein 1
14 Sobic.003G307900 BSD domain containing protein, expressed -
15 Sobic.003G252900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
16 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
17 Sobic.001G285300 expressed protein -
18 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
19 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
20 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein


Gene co-expression network
sample Sobic002G385300 Sobic002G385300 Sobic002G390400 Sobic002G390400 Sobic002G385300--Sobic002G390400 Sobic002G252900 Sobic002G252900 Sobic002G385300--Sobic002G252900 Sobic008G111700 Sobic008G111700 Sobic002G385300--Sobic008G111700 Sobic008G116600 Sobic008G116600 Sobic002G385300--Sobic008G116600 Sobic001G498400 Sobic001G498400 Sobic002G385300--Sobic001G498400 Sobic009G030400 Sobic009G030400 Sobic002G385300--Sobic009G030400 Sobic006G261100 Sobic006G261100 Sobic002G385300--Sobic006G261100 Sobic001G135500 Sobic001G135500 Sobic002G385300--Sobic001G135500 Sobic002G062500 Sobic002G062500 Sobic002G385300--Sobic002G062500 Sobic002G390400--Sobic001G135500 Sobic003G415100 Sobic003G415100 Sobic002G390400--Sobic003G415100 Sobic009G069200 Sobic009G069200 Sobic002G390400--Sobic009G069200 Sobic005G198200 Sobic005G198200 Sobic002G390400--Sobic005G198200 Sobic005G030100 Sobic005G030100 Sobic002G390400--Sobic005G030100 Sobic002G390400--Sobic009G030400 Sobic009G113100 Sobic009G113100 Sobic002G390400--Sobic009G113100 Sobic008G156200 Sobic008G156200 Sobic002G390400--Sobic008G156200 Sobic001G429200 Sobic001G429200 Sobic002G390400--Sobic001G429200 Sobic002G252900--Sobic002G062500 Sobic004G242000 Sobic004G242000 Sobic002G252900--Sobic004G242000 Sobic002G252900--Sobic009G030400 Sobic004G345100 Sobic004G345100 Sobic002G252900--Sobic004G345100 Sobic002G252900--Sobic002G385300 Sobic009G060400 Sobic009G060400 Sobic002G252900--Sobic009G060400 Sobic010G250100 Sobic010G250100 Sobic002G252900--Sobic010G250100 Sobic002G252900--Sobic002G390400 Sobic010G256200 Sobic010G256200 Sobic002G252900--Sobic010G256200 Sobic001G285300 Sobic001G285300 Sobic008G111700--Sobic001G285300 Sobic003G038600 Sobic003G038600 Sobic008G111700--Sobic003G038600 Sobic001G448200 Sobic001G448200 Sobic008G111700--Sobic001G448200 Sobic001G349400 Sobic001G349400 Sobic008G111700--Sobic001G349400 Sobic003G247900 Sobic003G247900 Sobic008G111700--Sobic003G247900 Sobic003G031200 Sobic003G031200 Sobic008G111700--Sobic003G031200 Sobic003G043400 Sobic003G043400 Sobic008G111700--Sobic003G043400 Sobic006G094600 Sobic006G094600 Sobic008G111700--Sobic006G094600 Sobic008G111700--Sobic006G261100 Sobic004G033200 Sobic004G033200 Sobic008G116600--Sobic004G033200 Sobic006G212900 Sobic006G212900 Sobic008G116600--Sobic006G212900 Sobic002G332200 Sobic002G332200 Sobic008G116600--Sobic002G332200 Sobic008G116600--Sobic002G385300 Sobic009G195700 Sobic009G195700 Sobic008G116600--Sobic009G195700 Sobic004G058600 Sobic004G058600 Sobic008G116600--Sobic004G058600 Sobic004G066500 Sobic004G066500 Sobic008G116600--Sobic004G066500 Sobic003G126800 Sobic003G126800 Sobic008G116600--Sobic003G126800 Sobic003G200600 Sobic003G200600 Sobic008G116600--Sobic003G200600 Sobic008G058700 Sobic008G058700 Sobic001G498400--Sobic008G058700 Sobic003G382900 Sobic003G382900 Sobic001G498400--Sobic003G382900 Sobic001G498400--Sobic002G385300 Sobic001G498400--Sobic006G261100 Sobic001G498400--Sobic008G111700 Sobic001G498400--Sobic003G031200 Sobic003G407900 Sobic003G407900 Sobic001G498400--Sobic003G407900 Sobic003G189700 Sobic003G189700 Sobic001G498400--Sobic003G189700 Sobic002G276900 Sobic002G276900 Sobic001G498400--Sobic002G276900 Sobic009G030400--Sobic005G030100 Sobic009G002000 Sobic009G002000 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic008G160500 Sobic008G160500 Sobic009G030400--Sobic008G160500 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic006G061100 Sobic006G061100 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G120800 Sobic006G120800 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100 Sobic003G212900 Sobic003G212900 Sobic001G135500--Sobic003G212900 Sobic010G077500 Sobic010G077500 Sobic001G135500--Sobic010G077500 Sobic002G245000 Sobic002G245000 Sobic001G135500--Sobic002G245000 Sobic007G187600 Sobic007G187600 Sobic001G135500--Sobic007G187600 Sobic001G135500--Sobic002G390400 Sobic008G021000 Sobic008G021000 Sobic001G135500--Sobic008G021000 Sobic009G045200 Sobic009G045200 Sobic001G135500--Sobic009G045200 Sobic001G005600 Sobic001G005600 Sobic001G135500--Sobic001G005600 Sobic001G034500 Sobic001G034500 Sobic001G135500--Sobic001G034500 Sobic002G062500--Sobic002G252900 Sobic002G062500--Sobic006G261100 Sobic002G359900 Sobic002G359900 Sobic002G062500--Sobic002G359900 Sobic002G062500--Sobic002G385300 Sobic002G062500--Sobic009G055600 Sobic002G062500--Sobic005G030100 Sobic010G168200 Sobic010G168200 Sobic002G062500--Sobic010G168200 Sobic001G196700 Sobic001G196700 Sobic002G062500--Sobic001G196700 Sobic002G062500--Sobic002G390400
Octagon: transcription factors


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