Gene annotation
Transcriptome id Sobic.002G252900.2,Sobic.002G252900.1
Synonym Sb02g028860
Functional annotation DNA repair ATPase-related, putative, expressed
UniProt A0A1W0W5R8 , A0A1W0W5U9
Pfam -
Panther DB PTHR34360 PTHR34360:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G31340 : myosin heavy chain-related
RAP-DB (Rice) LOC_Os09g32250.2 : DNA repair ATPase-related, putative, expressed
MaizeGDB (Corn) Zm00025a014260 , Zm00025a005165
Brachypodium KQJ90843 , KQJ90845 , KQJ99017 , KQJ99016 , KQJ99015 , KQJ99014 , KQJ99013 , KQJ90846 , KQJ90844
Barley HORVU7Hr1G052350.2 , HORVU7Hr1G052350.1
Wheat TraesCS7B02G149500 , TraesCS7B02G149500 , TraesCS7B02G149500 , TraesCS7A02G253000 , TraesCS7A02G253000 , TraesCS7A02G253000 , TraesCS7A02G253000
Populus -


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cDNA sequences
Sobic.002G252900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G062500 aldehyde dehydrogenase, putative, expressed K00140: mmsA, iolA, malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase
2 Sobic.004G242000 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
3 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
4 Sobic.004G345100 expressed protein -
5 Sobic.002G385300 helix-loop-helix DNA-binding domain containing protein, expressed -
6 Sobic.009G060400 proline-rich family protein, putative, expressed -
7 Sobic.010G250100 "CIL, CIA2 like (Chloroplast import apparatus)"(PubMedID : 28640841)@CCT motif family protein, expressed -
8 Sobic.002G390400 expressed protein -
9 Sobic.010G256200 expressed protein -
10 Sobic.003G307900 BSD domain containing protein, expressed -
11 Sobic.003G062400 PHD finger protein, putative, expressed -
12 Sobic.001G429200 AT hook motif family protein, expressed -
13 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
14 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
15 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
16 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
17 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
18 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
19 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
20 Sobic.002G142700 PPR repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic002G252900 Sobic002G252900 Sobic002G062500 Sobic002G062500 Sobic002G252900--Sobic002G062500 Sobic004G242000 Sobic004G242000 Sobic002G252900--Sobic004G242000 Sobic009G030400 Sobic009G030400 Sobic002G252900--Sobic009G030400 Sobic004G345100 Sobic004G345100 Sobic002G252900--Sobic004G345100 Sobic002G385300 Sobic002G385300 Sobic002G252900--Sobic002G385300 Sobic009G060400 Sobic009G060400 Sobic002G252900--Sobic009G060400 Sobic010G250100 Sobic010G250100 Sobic002G252900--Sobic010G250100 Sobic002G390400 Sobic002G390400 Sobic002G252900--Sobic002G390400 Sobic010G256200 Sobic010G256200 Sobic002G252900--Sobic010G256200 Sobic002G062500--Sobic002G252900 Sobic006G261100 Sobic006G261100 Sobic002G062500--Sobic006G261100 Sobic002G359900 Sobic002G359900 Sobic002G062500--Sobic002G359900 Sobic002G062500--Sobic002G385300 Sobic009G055600 Sobic009G055600 Sobic002G062500--Sobic009G055600 Sobic005G030100 Sobic005G030100 Sobic002G062500--Sobic005G030100 Sobic010G168200 Sobic010G168200 Sobic002G062500--Sobic010G168200 Sobic001G196700 Sobic001G196700 Sobic002G062500--Sobic001G196700 Sobic002G062500--Sobic002G390400 Sobic004G242000--Sobic010G256200 Sobic004G242000--Sobic002G252900 Sobic003G051100 Sobic003G051100 Sobic004G242000--Sobic003G051100 Sobic004G015300 Sobic004G015300 Sobic004G242000--Sobic004G015300 Sobic002G388100 Sobic002G388100 Sobic004G242000--Sobic002G388100 Sobic009G105000 Sobic009G105000 Sobic004G242000--Sobic009G105000 Sobic003G415100 Sobic003G415100 Sobic004G242000--Sobic003G415100 Sobic002G051200 Sobic002G051200 Sobic004G242000--Sobic002G051200 Sobic004G242000--Sobic009G060400 Sobic009G030400--Sobic005G030100 Sobic009G002000 Sobic009G002000 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic008G160500 Sobic008G160500 Sobic009G030400--Sobic008G160500 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic006G061100 Sobic006G061100 Sobic009G030400--Sobic006G061100 Sobic009G030400--Sobic009G055600 Sobic006G072400 Sobic006G072400 Sobic004G345100--Sobic006G072400 Sobic004G028800 Sobic004G028800 Sobic004G345100--Sobic004G028800 Sobic003G004500 Sobic003G004500 Sobic004G345100--Sobic003G004500 Sobic004G345100--Sobic006G261100 Sobic004G345100--Sobic002G359900 Sobic004G345100--Sobic002G252900 Sobic006G120800 Sobic006G120800 Sobic004G345100--Sobic006G120800 Sobic001G458200 Sobic001G458200 Sobic004G345100--Sobic001G458200 Sobic004G345100--Sobic003G415100 Sobic002G385300--Sobic002G390400 Sobic002G385300--Sobic002G252900 Sobic008G111700 Sobic008G111700 Sobic002G385300--Sobic008G111700 Sobic008G116600 Sobic008G116600 Sobic002G385300--Sobic008G116600 Sobic001G498400 Sobic001G498400 Sobic002G385300--Sobic001G498400 Sobic002G385300--Sobic009G030400 Sobic002G385300--Sobic006G261100 Sobic001G135500 Sobic001G135500 Sobic002G385300--Sobic001G135500 Sobic002G385300--Sobic002G062500 Sobic006G245700 Sobic006G245700 Sobic009G060400--Sobic006G245700 Sobic007G036800 Sobic007G036800 Sobic009G060400--Sobic007G036800 Sobic009G060400--Sobic010G256200 Sobic001G346700 Sobic001G346700 Sobic009G060400--Sobic001G346700 Sobic001G425200 Sobic001G425200 Sobic009G060400--Sobic001G425200 Sobic003G304800 Sobic003G304800 Sobic009G060400--Sobic003G304800 Sobic001G115500 Sobic001G115500 Sobic009G060400--Sobic001G115500 Sobic006G091850 Sobic006G091850 Sobic009G060400--Sobic006G091850 Sobic008G125000 Sobic008G125000 Sobic009G060400--Sobic008G125000 Sobic010G250100--Sobic002G252900 Sobic009G102900 Sobic009G102900 Sobic010G250100--Sobic009G102900 Sobic003G222200 Sobic003G222200 Sobic010G250100--Sobic003G222200 Sobic010G088300 Sobic010G088300 Sobic010G250100--Sobic010G088300 Sobic010G250100--Sobic001G115500 Sobic003G307900 Sobic003G307900 Sobic010G250100--Sobic003G307900 Sobic010G250100--Sobic009G030400 Sobic006G109500 Sobic006G109500 Sobic010G250100--Sobic006G109500 Sobic001G401900 Sobic001G401900 Sobic010G250100--Sobic001G401900 Sobic002G390400--Sobic001G135500 Sobic002G390400--Sobic003G415100 Sobic009G069200 Sobic009G069200 Sobic002G390400--Sobic009G069200 Sobic005G198200 Sobic005G198200 Sobic002G390400--Sobic005G198200 Sobic002G390400--Sobic005G030100 Sobic002G390400--Sobic009G030400 Sobic009G113100 Sobic009G113100 Sobic002G390400--Sobic009G113100 Sobic008G156200 Sobic008G156200 Sobic002G390400--Sobic008G156200 Sobic001G429200 Sobic001G429200 Sobic002G390400--Sobic001G429200 Sobic001G157600 Sobic001G157600 Sobic010G256200--Sobic001G157600 Sobic001G123201 Sobic001G123201 Sobic010G256200--Sobic001G123201 Sobic010G256200--Sobic004G242000 Sobic010G256200--Sobic002G051200 Sobic001G154400 Sobic001G154400 Sobic010G256200--Sobic001G154400 Sobic010G256200--Sobic009G060400 Sobic010G256200--Sobic009G030400 Sobic004G318400 Sobic004G318400 Sobic010G256200--Sobic004G318400 Sobic004G272900 Sobic004G272900 Sobic010G256200--Sobic004G272900
Octagon: transcription factors


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