Gene annotation
Transcriptome id Sobic.001G429200.1,Sobic.001G429200.2,Sobic.001G429200.3,Sobic.001G429200.4,Sobic.001G429200.5
Synonym Sb01g040350
Functional annotation AT hook motif family protein, expressed
UniProt A0A1B6QP96 , A0A1Z5SAJ9 , A0A1B6QP75 , A0A1Z5SAE8 , A0A1Z5SAB3
Pfam PF00004
Panther DB PTHR12172 PTHR12172:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005524; ATP binding GO:0007049cell cycle GO:0006281DNA repair GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G77620 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g15580.1 : AT hook motif family protein, expressed
MaizeGDB (Corn) Zm00025a052819
Brachypodium KQK22467
Barley HORVU4Hr1G061490.41 , HORVU4Hr1G061490.43 , HORVU4Hr1G061490.42 , HORVU4Hr1G061490.45 , HORVU4Hr1G061490.44 , HORVU4Hr1G061490.46 , HORVU4Hr1G061490.18 , HORVU4Hr1G061490.19 , HORVU4Hr1G061490.12 , HORVU4Hr1G061490.13 , HORVU4Hr1G061490.10 , HORVU4Hr1G061490.11 , HORVU4Hr1G061490.16 , HORVU4Hr1G061490.17 , HORVU4Hr1G061490.14 , HORVU4Hr1G061490.15 , HORVU4Hr1G061490.40 , HORVU4Hr1G061490.23 , HORVU4Hr1G061490.22 , HORVU4Hr1G061490.21 , HORVU4Hr1G061490.20 , HORVU4Hr1G061490.27 , HORVU4Hr1G061490.26 , HORVU4Hr1G061490.25 , HORVU4Hr1G061490.24 , HORVU4Hr1G061490.29 , HORVU4Hr1G061490.1 , HORVU4Hr1G061490.2 , HORVU4Hr1G061490.4 , HORVU4Hr1G061490.5 , HORVU4Hr1G061490.6 , HORVU4Hr1G061490.7 , HORVU4Hr1G061490.8 , HORVU4Hr1G061490.9 , HORVU4Hr1G061490.30 , HORVU4Hr1G061490.31 , HORVU4Hr1G061490.32 , HORVU4Hr1G061490.33 , HORVU4Hr1G061490.34 , HORVU4Hr1G061490.35 , HORVU4Hr1G061490.36 , HORVU4Hr1G061490.37 , HORVU4Hr1G061490.38 , HORVU4Hr1G061490.39 , HORVU4Hr1G061490.3
Wheat TraesCS4B02G216600 , TraesCS4B02G216600 , TraesCS4B02G216600 , TraesCS4B02G216600 , TraesCS4D02G216900 , TraesCS4A02G087800 , TraesCS4A02G087800 , TraesCS4A02G087800 , TraesCS4A02G087800 , TraesCS4D02G216900 , TraesCS4D02G216900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G390400 expressed protein -
2 Sobic.003G180100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
3 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
4 Sobic.004G050300 FAD dependent oxidoreductase domain containing protein, expressed -
5 Sobic.010G052400 SET domain containing protein, expressed K11430: [histone H3]-lysine27 N-trimethyltransferase EZH2
6 Sobic.009G069200 glycine-rich protein, putative, expressed -
7 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
8 Sobic.001G507200 PIR, putative, expressed K05749: cytoplasmic FMR1 interacting protein
9 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
10 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -
11 Sobic.007G167800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dihydroxy-acid dehydratase, putative, expressed K01687: dihydroxy-acid dehydratase
12 Sobic.007G072100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBL44 - F-box domain and LRR containing protein, expressed -
13 Sobic.002G253900 growth regulator related protein, putative, expressed -
14 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
15 Sobic.003G298900 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
16 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
17 Sobic.003G103701 - K04728: ATM, serine-protein kinase ATM
18 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
19 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
20 Sobic.007G036800 xylosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic001G429200 Sobic001G429200 Sobic002G390400 Sobic002G390400 Sobic001G429200--Sobic002G390400 Sobic003G180100 Sobic003G180100 Sobic001G429200--Sobic003G180100 Sobic001G346700 Sobic001G346700 Sobic001G429200--Sobic001G346700 Sobic004G050300 Sobic004G050300 Sobic001G429200--Sobic004G050300 Sobic010G052400 Sobic010G052400 Sobic001G429200--Sobic010G052400 Sobic009G069200 Sobic009G069200 Sobic001G429200--Sobic009G069200 Sobic001G115500 Sobic001G115500 Sobic001G429200--Sobic001G115500 Sobic001G507200 Sobic001G507200 Sobic001G429200--Sobic001G507200 Sobic003G415100 Sobic003G415100 Sobic001G429200--Sobic003G415100 Sobic001G135500 Sobic001G135500 Sobic002G390400--Sobic001G135500 Sobic002G390400--Sobic003G415100 Sobic002G390400--Sobic009G069200 Sobic005G198200 Sobic005G198200 Sobic002G390400--Sobic005G198200 Sobic005G030100 Sobic005G030100 Sobic002G390400--Sobic005G030100 Sobic009G030400 Sobic009G030400 Sobic002G390400--Sobic009G030400 Sobic009G113100 Sobic009G113100 Sobic002G390400--Sobic009G113100 Sobic008G156200 Sobic008G156200 Sobic002G390400--Sobic008G156200 Sobic002G390400--Sobic001G429200 Sobic009G148000 Sobic009G148000 Sobic003G180100--Sobic009G148000 Sobic002G343000 Sobic002G343000 Sobic003G180100--Sobic002G343000 Sobic003G180100--Sobic001G429200 Sobic003G161800 Sobic003G161800 Sobic003G180100--Sobic003G161800 Sobic001G541400 Sobic001G541400 Sobic003G180100--Sobic001G541400 Sobic005G074400 Sobic005G074400 Sobic003G180100--Sobic005G074400 Sobic006G200901 Sobic006G200901 Sobic003G180100--Sobic006G200901 Sobic003G180100--Sobic002G390400 Sobic004G242200 Sobic004G242200 Sobic003G180100--Sobic004G242200 Sobic009G129600 Sobic009G129600 Sobic001G346700--Sobic009G129600 Sobic004G347100 Sobic004G347100 Sobic001G346700--Sobic004G347100 Sobic001G346700--Sobic003G415100 Sobic003G354100 Sobic003G354100 Sobic001G346700--Sobic003G354100 Sobic007G188900 Sobic007G188900 Sobic001G346700--Sobic007G188900 Sobic002G148400 Sobic002G148400 Sobic001G346700--Sobic002G148400 Sobic007G139400 Sobic007G139400 Sobic001G346700--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic001G346700--Sobic002G268900 Sobic002G334600 Sobic002G334600 Sobic001G346700--Sobic002G334600 Sobic007G167800 Sobic007G167800 Sobic004G050300--Sobic007G167800 Sobic004G050300--Sobic001G429200 Sobic007G072100 Sobic007G072100 Sobic004G050300--Sobic007G072100 Sobic003G103701 Sobic003G103701 Sobic004G050300--Sobic003G103701 Sobic003G113900 Sobic003G113900 Sobic004G050300--Sobic003G113900 Sobic004G050300--Sobic006G200901 Sobic002G253900 Sobic002G253900 Sobic004G050300--Sobic002G253900 Sobic009G068700 Sobic009G068700 Sobic004G050300--Sobic009G068700 Sobic004G050300--Sobic005G030100 Sobic004G306100 Sobic004G306100 Sobic010G052400--Sobic004G306100 Sobic010G103500 Sobic010G103500 Sobic010G052400--Sobic010G103500 Sobic003G409600 Sobic003G409600 Sobic010G052400--Sobic003G409600 Sobic002G271400 Sobic002G271400 Sobic010G052400--Sobic002G271400 Sobic006G127200 Sobic006G127200 Sobic010G052400--Sobic006G127200 Sobic002G260700 Sobic002G260700 Sobic010G052400--Sobic002G260700 Sobic004G001600 Sobic004G001600 Sobic010G052400--Sobic004G001600 Sobic001G296800 Sobic001G296800 Sobic010G052400--Sobic001G296800 Sobic001G425200 Sobic001G425200 Sobic010G052400--Sobic001G425200 Sobic009G069200--Sobic009G113100 Sobic009G069200--Sobic003G415100 Sobic010G038900 Sobic010G038900 Sobic009G069200--Sobic010G038900 Sobic009G069200--Sobic002G390400 Sobic009G069200--Sobic005G198200 Sobic002G315100 Sobic002G315100 Sobic009G069200--Sobic002G315100 Sobic001G090300 Sobic001G090300 Sobic009G069200--Sobic001G090300 Sobic005G160200 Sobic005G160200 Sobic009G069200--Sobic005G160200 Sobic008G045800 Sobic008G045800 Sobic009G069200--Sobic008G045800 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic002G208400 Sobic002G208400 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic009G052100 Sobic009G052100 Sobic001G507200--Sobic009G052100 Sobic009G049200 Sobic009G049200 Sobic001G507200--Sobic009G049200 Sobic006G173200 Sobic006G173200 Sobic001G507200--Sobic006G173200 Sobic004G315700 Sobic004G315700 Sobic001G507200--Sobic004G315700 Sobic006G071628 Sobic006G071628 Sobic001G507200--Sobic006G071628 Sobic001G507200--Sobic001G296800 Sobic001G385400 Sobic001G385400 Sobic001G507200--Sobic001G385400 Sobic008G192700 Sobic008G192700 Sobic001G507200--Sobic008G192700 Sobic002G399900 Sobic002G399900 Sobic001G507200--Sobic002G399900 Sobic003G415100--Sobic001G346700 Sobic003G415100--Sobic009G069200 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic003G415100--Sobic001G090300 Sobic001G123201 Sobic001G123201 Sobic003G415100--Sobic001G123201 Sobic006G126600 Sobic006G126600 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400
Octagon: transcription factors


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