Gene annotation
Transcriptome id Sobic.003G103701.10,Sobic.003G103701.5,Sobic.003G103701.12,Sobic.003G103701.2,Sobic.003G103701.6,Sobic.003G103701.7,Sobic.003G103701.11,Sobic.003G103701.1,Sobic.003G103701.9,Sobic.003G103701.4,Sobic.003G103701.3,Sobic.003G103701.8
Synonym -
Functional annotation -
UniProt A0A1W0VWQ8 , A0A1W0VWN9 , A0A1W0VWP1 , A0A1W0VWM4 , A0A1W0VWL4
Pfam PF02260 PF00454
Panther DB PTHR11139 PTHR11139:SF72 PTHR37079 PTHR37079:SF2
NCBI CDD -
KEGG Orthology K04728; ATM, serine-protein kinase ATM
Gene Ontology GO:0005515; protein binding GO:0016773phosphotransferase activity, alcohol group as acceptor


Orthologs (automatic annotation)
TAIR AT3G48190 : ataxia-telangiectasia mutated
RAP-DB (Rice) LOC_Os01g01689.1 : phosphatidylinositol 3- and 4-kinase family protein, expressed
MaizeGDB (Corn) Zm00025a023814
Brachypodium PNT69797 , PNT69796 , PNT69795 , PNT69794 , PNT69799 , PNT69798 , PNT69800
Barley HORVU3Hr1G000420.62 , HORVU3Hr1G000420.63 , HORVU3Hr1G000420.60 , HORVU3Hr1G000420.61 , HORVU3Hr1G000420.66 , HORVU3Hr1G000420.67 , HORVU3Hr1G000420.64 , HORVU3Hr1G000420.65 , HORVU3Hr1G000420.17 , HORVU3Hr1G000420.16 , HORVU3Hr1G000420.14 , HORVU3Hr1G000420.13 , HORVU3Hr1G000420.12 , HORVU3Hr1G000420.19 , HORVU3Hr1G000420.18 , HORVU3Hr1G000420.9 , HORVU3Hr1G000420.8 , HORVU3Hr1G000420.7 , HORVU3Hr1G000420.6 , HORVU3Hr1G000420.5 , HORVU3Hr1G000420.4 , HORVU3Hr1G000420.3 , HORVU3Hr1G000420.1 , HORVU3Hr1G000420.39 , HORVU3Hr1G000420.38 , HORVU3Hr1G000420.31 , HORVU3Hr1G000420.32 , HORVU3Hr1G000420.34 , HORVU3Hr1G000420.36 , HORVU3Hr1G000420.59 , HORVU3Hr1G000420.58 , HORVU3Hr1G000420.53 , HORVU3Hr1G000420.57 , HORVU3Hr1G000420.56 , HORVU3Hr1G000420.55 , HORVU3Hr1G000420.54 , HORVU3Hr1G000420.28 , HORVU3Hr1G000420.29 , HORVU3Hr1G000420.26 , HORVU3Hr1G000420.27 , HORVU3Hr1G000420.24 , HORVU3Hr1G000420.25 , HORVU3Hr1G000420.22 , HORVU3Hr1G000420.23 , HORVU3Hr1G000420.21 , HORVU3Hr1G000420.49 , HORVU3Hr1G000420.40 , HORVU3Hr1G000420.41 , HORVU3Hr1G000420.44 , HORVU3Hr1G000420.45 , HORVU3Hr1G000420.46 , HORVU3Hr1G000420.47 , HORVU3Hr1G000420.30 , HORVU3Hr1G000420.33 , HORVU3Hr1G000420.35 , HORVU3Hr1G000420.37 , HORVU3Hr1G000420.48
Wheat TraesCS1B02G342800 , TraesCS1B02G342800 , TraesCS1A02G329400 , TraesCS1D02G331500 , TraesCS1D02G331500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G050300 FAD dependent oxidoreductase domain containing protein, expressed -
2 Sobic.002G056000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@C-5 cytosine-specific DNA methylase, putative, expressed K00558: DNMT1, DNA (cytosine-5)-methyltransferase 1
3 Sobic.006G200901 - -
4 Sobic.003G180100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
5 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
6 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
7 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
8 Sobic.009G068700 glutaminyl-tRNA synthetase, putative, expressed K01886: QARS, glutaminyl-tRNA synthetase
9 Sobic.001G429200 AT hook motif family protein, expressed -
10 Sobic.002G253900 growth regulator related protein, putative, expressed -
11 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
12 Sobic.002G390400 expressed protein -
13 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
14 Sobic.002G250550 - -
15 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
16 Sobic.007G072100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBL44 - F-box domain and LRR containing protein, expressed -
17 Sobic.005G074400 OsPDIL1-1 protein disulfide isomerase PDIL1-1, expressed K09580: PDIA1, protein disulfide-isomerase A1
18 Sobic.002G351700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
19 Sobic.009G069200 glycine-rich protein, putative, expressed -
20 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase


Gene co-expression network
sample Sobic003G103701 Sobic003G103701 Sobic004G050300 Sobic004G050300 Sobic003G103701--Sobic004G050300 Sobic002G056000 Sobic002G056000 Sobic003G103701--Sobic002G056000 Sobic006G200901 Sobic006G200901 Sobic003G103701--Sobic006G200901 Sobic003G180100 Sobic003G180100 Sobic003G103701--Sobic003G180100 Sobic003G161800 Sobic003G161800 Sobic003G103701--Sobic003G161800 Sobic009G148000 Sobic009G148000 Sobic003G103701--Sobic009G148000 Sobic001G067000 Sobic001G067000 Sobic003G103701--Sobic001G067000 Sobic009G068700 Sobic009G068700 Sobic003G103701--Sobic009G068700 Sobic001G429200 Sobic001G429200 Sobic003G103701--Sobic001G429200 Sobic007G167800 Sobic007G167800 Sobic004G050300--Sobic007G167800 Sobic004G050300--Sobic001G429200 Sobic007G072100 Sobic007G072100 Sobic004G050300--Sobic007G072100 Sobic004G050300--Sobic003G103701 Sobic003G113900 Sobic003G113900 Sobic004G050300--Sobic003G113900 Sobic004G050300--Sobic006G200901 Sobic002G253900 Sobic002G253900 Sobic004G050300--Sobic002G253900 Sobic004G050300--Sobic009G068700 Sobic005G030100 Sobic005G030100 Sobic004G050300--Sobic005G030100 Sobic001G005800 Sobic001G005800 Sobic002G056000--Sobic001G005800 Sobic001G123100 Sobic001G123100 Sobic002G056000--Sobic001G123100 Sobic002G056000--Sobic002G253900 Sobic001G507000 Sobic001G507000 Sobic002G056000--Sobic001G507000 Sobic002G056000--Sobic009G148000 Sobic002G056000--Sobic003G103701 Sobic009G254000 Sobic009G254000 Sobic002G056000--Sobic009G254000 Sobic002G006100 Sobic002G006100 Sobic002G056000--Sobic002G006100 Sobic002G254800 Sobic002G254800 Sobic002G056000--Sobic002G254800 Sobic002G343000 Sobic002G343000 Sobic006G200901--Sobic002G343000 Sobic006G143300 Sobic006G143300 Sobic006G200901--Sobic006G143300 Sobic004G014100 Sobic004G014100 Sobic006G200901--Sobic004G014100 Sobic006G200901--Sobic009G148000 Sobic006G200901--Sobic002G253900 Sobic003G217500 Sobic003G217500 Sobic006G200901--Sobic003G217500 Sobic006G186300 Sobic006G186300 Sobic006G200901--Sobic006G186300 Sobic002G230400 Sobic002G230400 Sobic006G200901--Sobic002G230400 Sobic004G075700 Sobic004G075700 Sobic006G200901--Sobic004G075700 Sobic003G180100--Sobic009G148000 Sobic003G180100--Sobic002G343000 Sobic003G180100--Sobic001G429200 Sobic003G180100--Sobic003G161800 Sobic001G541400 Sobic001G541400 Sobic003G180100--Sobic001G541400 Sobic005G074400 Sobic005G074400 Sobic003G180100--Sobic005G074400 Sobic003G180100--Sobic006G200901 Sobic002G390400 Sobic002G390400 Sobic003G180100--Sobic002G390400 Sobic004G242200 Sobic004G242200 Sobic003G180100--Sobic004G242200 Sobic003G161800--Sobic002G254800 Sobic001G373000 Sobic001G373000 Sobic003G161800--Sobic001G373000 Sobic009G030400 Sobic009G030400 Sobic003G161800--Sobic009G030400 Sobic006G179400 Sobic006G179400 Sobic003G161800--Sobic006G179400 Sobic003G161800--Sobic003G180100 Sobic010G236200 Sobic010G236200 Sobic003G161800--Sobic010G236200 Sobic003G161800--Sobic005G030100 Sobic009G113100 Sobic009G113100 Sobic003G161800--Sobic009G113100 Sobic001G115500 Sobic001G115500 Sobic003G161800--Sobic001G115500 Sobic009G148000--Sobic002G343000 Sobic009G148000--Sobic002G253900 Sobic009G148000--Sobic006G200901 Sobic009G148000--Sobic006G186300 Sobic009G148000--Sobic003G217500 Sobic009G148000--Sobic001G005800 Sobic009G148000--Sobic004G014100 Sobic008G041900 Sobic008G041900 Sobic009G148000--Sobic008G041900 Sobic004G250600 Sobic004G250600 Sobic009G148000--Sobic004G250600 Sobic003G026900 Sobic003G026900 Sobic001G067000--Sobic003G026900 Sobic001G067000--Sobic006G143300 Sobic002G420800 Sobic002G420800 Sobic001G067000--Sobic002G420800 Sobic001G067000--Sobic002G230400 Sobic007G076500 Sobic007G076500 Sobic001G067000--Sobic007G076500 Sobic002G147466 Sobic002G147466 Sobic001G067000--Sobic002G147466 Sobic004G196800 Sobic004G196800 Sobic001G067000--Sobic004G196800 Sobic007G199500 Sobic007G199500 Sobic001G067000--Sobic007G199500 Sobic010G193700 Sobic010G193700 Sobic001G067000--Sobic010G193700 Sobic009G052100 Sobic009G052100 Sobic009G068700--Sobic009G052100 Sobic005G068800 Sobic005G068800 Sobic009G068700--Sobic005G068800 Sobic009G068700--Sobic007G167800 Sobic009G068700--Sobic007G072100 Sobic006G127200 Sobic006G127200 Sobic009G068700--Sobic006G127200 Sobic004G129500 Sobic004G129500 Sobic009G068700--Sobic004G129500 Sobic010G252700 Sobic010G252700 Sobic009G068700--Sobic010G252700 Sobic002G123600 Sobic002G123600 Sobic009G068700--Sobic002G123600 Sobic003G432300 Sobic003G432300 Sobic009G068700--Sobic003G432300 Sobic001G429200--Sobic002G390400 Sobic001G429200--Sobic003G180100 Sobic001G346700 Sobic001G346700 Sobic001G429200--Sobic001G346700 Sobic001G429200--Sobic004G050300 Sobic010G052400 Sobic010G052400 Sobic001G429200--Sobic010G052400 Sobic009G069200 Sobic009G069200 Sobic001G429200--Sobic009G069200 Sobic001G429200--Sobic001G115500 Sobic001G507200 Sobic001G507200 Sobic001G429200--Sobic001G507200 Sobic003G415100 Sobic003G415100 Sobic001G429200--Sobic003G415100
Octagon: transcription factors


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