Gene annotation
Transcriptome id Sobic.002G056000.2,Sobic.002G056000.4,Sobic.002G056000.3,Sobic.002G056000.1
Synonym Sb02g004680, DDM2, METI, DMT01, MET2, MET1, DMT1
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
C-5 cytosine-specific DNA methylase, putative, expressed
UniProt A0A1W0W2G9 , A0A1B6Q9F9
Pfam PF01426 PF00145 PF12047
Panther DB PTHR10629 PTHR10629:SF36
NCBI CDD KOG0919; C-5 cytosine-specific DNA methylase
KEGG Orthology K00558; DNMT1, DNA (cytosine-5)-methyltransferase 1
Gene Ontology GO:0003682; chromatin binding


Orthologs (automatic annotation)
TAIR AT5G49160 : methyltransferase 1
RAP-DB (Rice) LOC_Os07g08500.1 : C-5 cytosine-specific DNA methylase, putative, expressed
MaizeGDB (Corn) Zm00025a045197 , Zm00025a045196
Brachypodium KQK20553 , KQK20552 , KQK20551
Barley HORVU0Hr1G039040.10 , HORVU0Hr1G039040.11 , HORVU0Hr1G039040.12 , HORVU7Hr1G117100.20 , HORVU0Hr1G039040.6 , HORVU0Hr1G039040.7 , HORVU0Hr1G039040.4 , HORVU0Hr1G039040.5 , HORVU0Hr1G039040.3 , HORVU0Hr1G039040.1 , HORVU0Hr1G039040.8 , HORVU0Hr1G039040.9 , HORVU7Hr1G117100.9 , HORVU7Hr1G117100.3 , HORVU7Hr1G117100.2 , HORVU7Hr1G117100.1 , HORVU7Hr1G117100.6 , HORVU7Hr1G117100.5 , HORVU7Hr1G117100.4 , HORVU7Hr1G117100.19 , HORVU7Hr1G117100.18 , HORVU7Hr1G117100.13 , HORVU7Hr1G117100.12 , HORVU7Hr1G117100.11 , HORVU7Hr1G117100.10 , HORVU7Hr1G117100.17 , HORVU0Hr1G039040.2 , HORVU2Hr1G058800.1 , HORVU2Hr1G058800.3 , HORVU2Hr1G058800.2 , HORVU2Hr1G058800.5 , HORVU2Hr1G058800.4 , HORVU2Hr1G058800.7 , HORVU2Hr1G058800.6
Wheat TraesCS2A02G235900 , TraesCS2B02G260800 , TraesCS2B02G260800 , TraesCS2D02G241800
Populus -


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cDNA sequences
Sobic.002G056000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G005800 - K10885: XRCC5, KU80, ATP-dependent DNA helicase 2 subunit 2
2 Sobic.001G123100 Os3bglu8 - beta-glucosidase, exo-beta-glucansase, high similarity to Os3bglu7, expressed K05350: beta-glucosidase
3 Sobic.002G253900 growth regulator related protein, putative, expressed -
4 Sobic.001G507000 expressed protein -
5 Sobic.009G148000 anthranilate phosphoribosyltransferase, putative, expressed -
6 Sobic.003G103701 - K04728: ATM, serine-protein kinase ATM
7 Sobic.009G254000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@serine/threonine-protein kinase, putative, expressed -
8 Sobic.002G006100 phytosulfokine receptor precursor, putative, expressed -
9 Sobic.002G254800 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
10 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
11 Sobic.003G298900 1,3-beta-glucan synthase component, putative, expressed K11000: callose synthase
12 Sobic.006G200901 - -
13 Sobic.010G236200 RecF/RecN/SMC N terminal domain containing protein, expressed -
14 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -
15 Sobic.005G068800 TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed K10728: topoisomerase (DNA) II binding protein 1
16 Sobic.003G224700 glycosyltransferase family protein 1, putative, expressed -
17 Sobic.001G540700 expressed protein -
18 Sobic.003G161800 exportin 1, putative, expressed K14289: exportin-5
19 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
20 Sobic.007G032400 "homolog of maize FIE2 (WD40, repressor of endosperm development in the absence of fertilization)"(PubMedID : 12566582)@WD domain, G-beta repeat domain containing protein, expressed K11462: polycomb protein EED


Gene co-expression network
sample Sobic002G056000 Sobic002G056000 Sobic001G005800 Sobic001G005800 Sobic002G056000--Sobic001G005800 Sobic001G123100 Sobic001G123100 Sobic002G056000--Sobic001G123100 Sobic002G253900 Sobic002G253900 Sobic002G056000--Sobic002G253900 Sobic001G507000 Sobic001G507000 Sobic002G056000--Sobic001G507000 Sobic009G148000 Sobic009G148000 Sobic002G056000--Sobic009G148000 Sobic003G103701 Sobic003G103701 Sobic002G056000--Sobic003G103701 Sobic009G254000 Sobic009G254000 Sobic002G056000--Sobic009G254000 Sobic002G006100 Sobic002G006100 Sobic002G056000--Sobic002G006100 Sobic002G254800 Sobic002G254800 Sobic002G056000--Sobic002G254800 Sobic001G005800--Sobic002G253900 Sobic008G045800 Sobic008G045800 Sobic001G005800--Sobic008G045800 Sobic001G005800--Sobic002G056000 Sobic002G335500 Sobic002G335500 Sobic001G005800--Sobic002G335500 Sobic001G005800--Sobic009G148000 Sobic006G200901 Sobic006G200901 Sobic001G005800--Sobic006G200901 Sobic006G106200 Sobic006G106200 Sobic001G005800--Sobic006G106200 Sobic004G014100 Sobic004G014100 Sobic001G005800--Sobic004G014100 Sobic002G343000 Sobic002G343000 Sobic001G005800--Sobic002G343000 Sobic002G284100 Sobic002G284100 Sobic001G123100--Sobic002G284100 Sobic001G123100--Sobic002G253900 Sobic001G369800 Sobic001G369800 Sobic001G123100--Sobic001G369800 Sobic005G143100 Sobic005G143100 Sobic001G123100--Sobic005G143100 Sobic004G145300 Sobic004G145300 Sobic001G123100--Sobic004G145300 Sobic001G123300 Sobic001G123300 Sobic001G123100--Sobic001G123300 Sobic001G540700 Sobic001G540700 Sobic001G123100--Sobic001G540700 Sobic001G123100--Sobic002G006100 Sobic003G224700 Sobic003G224700 Sobic001G123100--Sobic003G224700 Sobic002G253900--Sobic009G148000 Sobic002G253900--Sobic001G123100 Sobic002G253900--Sobic006G200901 Sobic002G253900--Sobic002G343000 Sobic002G253900--Sobic001G005800 Sobic002G253900--Sobic001G540700 Sobic006G218900 Sobic006G218900 Sobic002G253900--Sobic006G218900 Sobic002G253900--Sobic002G284100 Sobic002G253900--Sobic002G006100 Sobic005G068800 Sobic005G068800 Sobic001G507000--Sobic005G068800 Sobic004G321400 Sobic004G321400 Sobic001G507000--Sobic004G321400 Sobic003G183700 Sobic003G183700 Sobic001G507000--Sobic003G183700 Sobic001G146900 Sobic001G146900 Sobic001G507000--Sobic001G146900 Sobic006G120600 Sobic006G120600 Sobic001G507000--Sobic006G120600 Sobic004G156200 Sobic004G156200 Sobic001G507000--Sobic004G156200 Sobic006G195500 Sobic006G195500 Sobic001G507000--Sobic006G195500 Sobic004G095200 Sobic004G095200 Sobic001G507000--Sobic004G095200 Sobic009G087000 Sobic009G087000 Sobic001G507000--Sobic009G087000 Sobic009G148000--Sobic002G343000 Sobic009G148000--Sobic002G253900 Sobic009G148000--Sobic006G200901 Sobic006G186300 Sobic006G186300 Sobic009G148000--Sobic006G186300 Sobic003G217500 Sobic003G217500 Sobic009G148000--Sobic003G217500 Sobic009G148000--Sobic001G005800 Sobic009G148000--Sobic004G014100 Sobic008G041900 Sobic008G041900 Sobic009G148000--Sobic008G041900 Sobic004G250600 Sobic004G250600 Sobic009G148000--Sobic004G250600 Sobic004G050300 Sobic004G050300 Sobic003G103701--Sobic004G050300 Sobic003G103701--Sobic002G056000 Sobic003G103701--Sobic006G200901 Sobic003G180100 Sobic003G180100 Sobic003G103701--Sobic003G180100 Sobic003G161800 Sobic003G161800 Sobic003G103701--Sobic003G161800 Sobic003G103701--Sobic009G148000 Sobic001G067000 Sobic001G067000 Sobic003G103701--Sobic001G067000 Sobic009G068700 Sobic009G068700 Sobic003G103701--Sobic009G068700 Sobic001G429200 Sobic001G429200 Sobic003G103701--Sobic001G429200 Sobic006G140300 Sobic006G140300 Sobic009G254000--Sobic006G140300 Sobic007G197100 Sobic007G197100 Sobic009G254000--Sobic007G197100 Sobic003G298900 Sobic003G298900 Sobic009G254000--Sobic003G298900 Sobic002G366000 Sobic002G366000 Sobic009G254000--Sobic002G366000 Sobic009G254000--Sobic001G540700 Sobic009G254000--Sobic003G224700 Sobic009G254000--Sobic002G006100 Sobic009G254000--Sobic004G250600 Sobic005G013300 Sobic005G013300 Sobic009G254000--Sobic005G013300 Sobic002G027600 Sobic002G027600 Sobic002G006100--Sobic002G027600 Sobic003G259300 Sobic003G259300 Sobic002G006100--Sobic003G259300 Sobic006G272800 Sobic006G272800 Sobic002G006100--Sobic006G272800 Sobic003G351900 Sobic003G351900 Sobic002G006100--Sobic003G351900 Sobic001G425700 Sobic001G425700 Sobic002G006100--Sobic001G425700 Sobic002G006100--Sobic003G298900 Sobic002G006100--Sobic002G284100 Sobic004G078500 Sobic004G078500 Sobic002G006100--Sobic004G078500 Sobic009G225500 Sobic009G225500 Sobic002G006100--Sobic009G225500 Sobic002G254800--Sobic003G161800 Sobic002G132600 Sobic002G132600 Sobic002G254800--Sobic002G132600 Sobic001G373000 Sobic001G373000 Sobic002G254800--Sobic001G373000 Sobic010G236200 Sobic010G236200 Sobic002G254800--Sobic010G236200 Sobic003G259600 Sobic003G259600 Sobic002G254800--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic002G254800--Sobic001G373800 Sobic006G033101 Sobic006G033101 Sobic002G254800--Sobic006G033101 Sobic004G038100 Sobic004G038100 Sobic002G254800--Sobic004G038100 Sobic009G032200 Sobic009G032200 Sobic002G254800--Sobic009G032200
Octagon: transcription factors


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