Gene annotation
Transcriptome id Sobic.005G068800.2,Sobic.005G068800.1,Sobic.005G068800.4,Sobic.005G068800.3
Synonym Sb05g005751, MEI1
Functional annotation TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed
UniProt A0A1B6PQL0 , A0A1Z5RI73 , A0A1B6PQM2 , A0A1Z5RH99
Pfam PF00533 PF12738 PF12738 PF00533
Panther DB PTHR13561 PTHR13561:SF20 PTHR13561:SF20 PTHR13561
NCBI CDD KOG1929; Nucleotide excision repair factor NEF2, RAD4/CUT5 component
KEGG Orthology K10728; topoisomerase (DNA) II binding protein 1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77320 : transcription coactivators
RAP-DB (Rice) LOC_Os11g08660.1 : TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed
MaizeGDB (Corn) Zm00025a012759
Brachypodium PNT64008 , PNT64009 , PNT64011 , PNT64010 , KQJ89088 , KQJ89087
Barley HORVU4Hr1G017780.20 , HORVU4Hr1G017780.21 , HORVU4Hr1G017780.22 , HORVU4Hr1G017780.23 , HORVU4Hr1G017780.24 , HORVU4Hr1G017780.25 , HORVU4Hr1G017780.26 , HORVU4Hr1G017780.27 , HORVU4Hr1G017780.28 , HORVU4Hr1G017780.29 , HORVU4Hr1G017780.18 , HORVU4Hr1G017720.2 , HORVU4Hr1G017720.1 , HORVU4Hr1G017780.15 , HORVU4Hr1G017780.14 , HORVU4Hr1G017780.17 , HORVU4Hr1G017780.16 , HORVU4Hr1G017780.11 , HORVU4Hr1G017780.10 , HORVU4Hr1G017780.13 , HORVU4Hr1G017780.12 , HORVU4Hr1G017780.19 , HORVU4Hr1G017780.1 , HORVU4Hr1G017780.3 , HORVU4Hr1G017780.2 , HORVU4Hr1G017780.5 , HORVU4Hr1G017780.4 , HORVU4Hr1G017780.7 , HORVU4Hr1G017780.6 , HORVU4Hr1G017780.9 , HORVU4Hr1G017780.8 , HORVU4Hr1G017780.33 , HORVU4Hr1G017780.32 , HORVU4Hr1G017780.31 , HORVU4Hr1G017780.30 , HORVU4Hr1G017780.37 , HORVU4Hr1G017780.36 , HORVU4Hr1G017780.35 , HORVU4Hr1G017780.34 , HORVU4Hr1G017780.39 , HORVU4Hr1G017780.38 , HORVU4Hr1G017780.44 , HORVU4Hr1G017780.42 , HORVU4Hr1G017780.43 , HORVU4Hr1G017780.40 , HORVU4Hr1G017780.41
Wheat TraesCS4B02G099800 , TraesCS4B02G099800 , TraesCS4B02G099800 , TraesCS4D02G096000 , TraesCS4A02G221600
Populus -


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cDNA sequences
Sobic.005G068800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G507000 expressed protein -
2 Sobic.004G156200 POLE1 - Putative DNA polymerase epsilon catalytic subunit, expressed K02324: DNA polymerase epsilon subunit 1
3 Sobic.004G095200 Peptidase family C50, putative, expressed K02365: separase
4 Sobic.006G120600 AAA-type ATPase family protein, putative, expressed -
5 Sobic.009G146250 - -
6 Sobic.006G195500 DNA-binding protein, putative, expressed K10742: DNA replication ATP-dependent helicase Dna2
7 Sobic.003G183700 MCM4 - Putative minichromosome maintenance MCM complex subunit 4, expressed K02212: MCM4, DNA replication licensing factor MCM4
8 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
9 Sobic.009G052100 tubulin/FtsZ domain containing protein, putative, expressed K10389: tubulin gamma
10 Sobic.002G238500 AGC_PVPK_like_kin82y.16 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
11 Sobic.008G090000 oxysterol-binding protein, putative, expressed -
12 Sobic.006G051000 POLA3 - Putative DNA polymerase alpha complex subunit, expressed K02685: DNA primase large subunit
13 Sobic.010G103700 POLA2 - Putative DNA polymerase alpha complex subunit, expressed K02321: DNA polymerase alpha subunit B
14 Sobic.002G351700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
15 Sobic.009G113900 expressed protein -
16 Sobic.002G095300 deoxynucleoside kinase family, putative, expressed K00893: deoxycitidine kinase
17 Sobic.008G118100 kelch repeat protein, putative, expressed -
18 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -
19 Sobic.001G377700 expressed protein K10895: fanconi anemia group I protein
20 Sobic.006G126800 expressed protein K10730: ATP-dependent DNA helicase Q4


Gene co-expression network
sample Sobic005G068800 Sobic005G068800 Sobic001G507000 Sobic001G507000 Sobic005G068800--Sobic001G507000 Sobic004G156200 Sobic004G156200 Sobic005G068800--Sobic004G156200 Sobic004G095200 Sobic004G095200 Sobic005G068800--Sobic004G095200 Sobic006G120600 Sobic006G120600 Sobic005G068800--Sobic006G120600 Sobic009G146250 Sobic009G146250 Sobic005G068800--Sobic009G146250 Sobic006G195500 Sobic006G195500 Sobic005G068800--Sobic006G195500 Sobic003G183700 Sobic003G183700 Sobic005G068800--Sobic003G183700 Sobic002G021200 Sobic002G021200 Sobic005G068800--Sobic002G021200 Sobic009G052100 Sobic009G052100 Sobic005G068800--Sobic009G052100 Sobic001G507000--Sobic005G068800 Sobic004G321400 Sobic004G321400 Sobic001G507000--Sobic004G321400 Sobic001G507000--Sobic003G183700 Sobic001G146900 Sobic001G146900 Sobic001G507000--Sobic001G146900 Sobic001G507000--Sobic006G120600 Sobic001G507000--Sobic004G156200 Sobic001G507000--Sobic006G195500 Sobic001G507000--Sobic004G095200 Sobic009G087000 Sobic009G087000 Sobic001G507000--Sobic009G087000 Sobic005G110535 Sobic005G110535 Sobic004G156200--Sobic005G110535 Sobic004G156200--Sobic005G068800 Sobic003G423600 Sobic003G423600 Sobic004G156200--Sobic003G423600 Sobic002G290000 Sobic002G290000 Sobic004G156200--Sobic002G290000 Sobic004G156200--Sobic009G087000 Sobic006G281400 Sobic006G281400 Sobic004G156200--Sobic006G281400 Sobic003G369200 Sobic003G369200 Sobic004G156200--Sobic003G369200 Sobic004G156200--Sobic009G146250 Sobic004G156200--Sobic009G052100 Sobic004G095200--Sobic004G321400 Sobic004G095200--Sobic005G110535 Sobic004G095200--Sobic004G156200 Sobic004G095200--Sobic002G290000 Sobic004G095200--Sobic005G068800 Sobic002G113400 Sobic002G113400 Sobic004G095200--Sobic002G113400 Sobic003G118100 Sobic003G118100 Sobic004G095200--Sobic003G118100 Sobic004G095200--Sobic009G087000 Sobic003G315700 Sobic003G315700 Sobic004G095200--Sobic003G315700 Sobic010G103700 Sobic010G103700 Sobic006G120600--Sobic010G103700 Sobic006G120600--Sobic003G183700 Sobic006G120600--Sobic006G195500 Sobic006G120600--Sobic002G290000 Sobic002G303800 Sobic002G303800 Sobic006G120600--Sobic002G303800 Sobic003G179500 Sobic003G179500 Sobic006G120600--Sobic003G179500 Sobic007G125300 Sobic007G125300 Sobic006G120600--Sobic007G125300 Sobic006G120600--Sobic009G087000 Sobic006G051000 Sobic006G051000 Sobic006G120600--Sobic006G051000 Sobic009G146250--Sobic004G156200 Sobic009G146250--Sobic006G195500 Sobic009G146250--Sobic002G021200 Sobic006G275500 Sobic006G275500 Sobic009G146250--Sobic006G275500 Sobic009G146250--Sobic006G120600 Sobic007G187700 Sobic007G187700 Sobic009G146250--Sobic007G187700 Sobic001G304800 Sobic001G304800 Sobic009G146250--Sobic001G304800 Sobic009G146250--Sobic005G068800 Sobic001G377700 Sobic001G377700 Sobic009G146250--Sobic001G377700 Sobic006G195500--Sobic006G051000 Sobic006G195500--Sobic003G183700 Sobic006G195500--Sobic010G103700 Sobic006G195500--Sobic001G377700 Sobic006G195500--Sobic009G087000 Sobic006G195500--Sobic006G120600 Sobic006G196600 Sobic006G196600 Sobic006G195500--Sobic006G196600 Sobic006G195500--Sobic005G110535 Sobic006G195500--Sobic003G179500 Sobic003G183700--Sobic006G051000 Sobic003G183700--Sobic009G087000 Sobic003G183700--Sobic006G195500 Sobic003G183700--Sobic010G103700 Sobic003G183700--Sobic003G179500 Sobic003G183700--Sobic005G110535 Sobic008G129200 Sobic008G129200 Sobic003G183700--Sobic008G129200 Sobic003G183700--Sobic004G321400 Sobic010G147700 Sobic010G147700 Sobic003G183700--Sobic010G147700 Sobic002G021200--Sobic007G187700 Sobic002G021200--Sobic001G377700 Sobic002G168000 Sobic002G168000 Sobic002G021200--Sobic002G168000 Sobic006G281900 Sobic006G281900 Sobic002G021200--Sobic006G281900 Sobic001G054700 Sobic001G054700 Sobic002G021200--Sobic001G054700 Sobic003G292700 Sobic003G292700 Sobic002G021200--Sobic003G292700 Sobic003G055600 Sobic003G055600 Sobic002G021200--Sobic003G055600 Sobic005G157300 Sobic005G157300 Sobic002G021200--Sobic005G157300 Sobic009G077300 Sobic009G077300 Sobic002G021200--Sobic009G077300 Sobic004G315700 Sobic004G315700 Sobic009G052100--Sobic004G315700 Sobic009G052100--Sobic004G156200 Sobic001G507200 Sobic001G507200 Sobic009G052100--Sobic001G507200 Sobic009G049200 Sobic009G049200 Sobic009G052100--Sobic009G049200 Sobic006G071628 Sobic006G071628 Sobic009G052100--Sobic006G071628 Sobic010G250800 Sobic010G250800 Sobic009G052100--Sobic010G250800 Sobic009G052100--Sobic003G315700 Sobic010G252700 Sobic010G252700 Sobic009G052100--Sobic010G252700 Sobic003G420300 Sobic003G420300 Sobic009G052100--Sobic003G420300
Octagon: transcription factors


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