Gene annotation
Transcriptome id Sobic.001G067000.1
Synonym Sb01g006090
Functional annotation expressed protein
UniProt C5WY83
Pfam PF04078
Panther DB PTHR12262 PTHR12262:SF3
NCBI CDD KOG3036; Protein involved in cell differentiation/sexual development
KEGG Orthology K12606; RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
Gene Ontology GO:0006402; mRNA catabolic process


Orthologs (automatic annotation)
TAIR AT3G20800 : Cell differentiation, Rcd1-like protein
RAP-DB (Rice) LOC_Os03g57130.1 : expressed protein
MaizeGDB (Corn) Zm00025a016637
Brachypodium -
Barley HORVU5Hr1G103190.20 , HORVU5Hr1G103190.21 , HORVU5Hr1G103190.3 , HORVU5Hr1G103190.2 , HORVU5Hr1G103190.1 , HORVU5Hr1G103190.7 , HORVU5Hr1G103190.6 , HORVU5Hr1G103190.5 , HORVU5Hr1G103190.4 , HORVU5Hr1G103190.9 , HORVU5Hr1G103190.8 , HORVU5Hr1G103190.13 , HORVU5Hr1G103190.12 , HORVU5Hr1G103190.11 , HORVU5Hr1G103190.10 , HORVU5Hr1G103190.17 , HORVU5Hr1G103190.16 , HORVU5Hr1G103190.15 , HORVU5Hr1G103190.14 , HORVU5Hr1G103190.19 , HORVU5Hr1G103190.18
Wheat TraesCS5A02G423100 , TraesCS5A02G423100 , TraesCS5B02G425000 , TraesCS5D02G431400 , TraesCS5D02G431400
Populus -


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cDNA sequences
Sobic.001G067000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G026900 expressed protein -
2 Sobic.006G143300 nuclear transport factor 2, putative, expressed -
3 Sobic.002G420800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stress responsive protein, putative, expressed -
4 Sobic.002G230400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
5 Sobic.007G076500 exonuclease, putative, expressed K18417: ERI1 exoribonuclease 2
6 Sobic.002G147466 - -
7 Sobic.004G196800 tetratricopeptide repeat containing protein, putative, expressed -
8 Sobic.007G199500 MBTB30 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
9 Sobic.010G193700 expressed protein -
10 Sobic.005G124400 - -
11 Sobic.010G133150 - -
12 Sobic.002G174500 OsFBX252 - F-box domain containing protein, expressed -
13 Sobic.001G269650 - -
14 Sobic.004G075700 PHD-finger domain containing protein, putative, expressed -
15 Sobic.001G437300 "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
16 Sobic.007G066200 - -
17 Sobic.003G358200 reticulon domain containing protein, putative, expressed -
18 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
19 Sobic.003G211600 - -
20 Sobic.002G286800 MATE efflux protein, putative, expressed -


Gene co-expression network
sample Sobic001G067000 Sobic001G067000 Sobic003G026900 Sobic003G026900 Sobic001G067000--Sobic003G026900 Sobic006G143300 Sobic006G143300 Sobic001G067000--Sobic006G143300 Sobic002G420800 Sobic002G420800 Sobic001G067000--Sobic002G420800 Sobic002G230400 Sobic002G230400 Sobic001G067000--Sobic002G230400 Sobic007G076500 Sobic007G076500 Sobic001G067000--Sobic007G076500 Sobic002G147466 Sobic002G147466 Sobic001G067000--Sobic002G147466 Sobic004G196800 Sobic004G196800 Sobic001G067000--Sobic004G196800 Sobic007G199500 Sobic007G199500 Sobic001G067000--Sobic007G199500 Sobic010G193700 Sobic010G193700 Sobic001G067000--Sobic010G193700 Sobic004G075700 Sobic004G075700 Sobic003G026900--Sobic004G075700 Sobic005G131800 Sobic005G131800 Sobic003G026900--Sobic005G131800 Sobic009G132650 Sobic009G132650 Sobic003G026900--Sobic009G132650 Sobic003G026900--Sobic001G067000 Sobic006G186300 Sobic006G186300 Sobic003G026900--Sobic006G186300 Sobic006G061100 Sobic006G061100 Sobic003G026900--Sobic006G061100 Sobic003G026900--Sobic002G230400 Sobic006G161300 Sobic006G161300 Sobic003G026900--Sobic006G161300 Sobic005G176875 Sobic005G176875 Sobic003G026900--Sobic005G176875 Sobic005G033700 Sobic005G033700 Sobic006G143300--Sobic005G033700 Sobic006G200901 Sobic006G200901 Sobic006G143300--Sobic006G200901 Sobic002G343000 Sobic002G343000 Sobic006G143300--Sobic002G343000 Sobic004G014100 Sobic004G014100 Sobic006G143300--Sobic004G014100 Sobic001G081800 Sobic001G081800 Sobic006G143300--Sobic001G081800 Sobic002G349000 Sobic002G349000 Sobic006G143300--Sobic002G349000 Sobic006G143300--Sobic002G230400 Sobic005G164800 Sobic005G164800 Sobic006G143300--Sobic005G164800 Sobic006G143300--Sobic006G186300 Sobic007G040000 Sobic007G040000 Sobic002G420800--Sobic007G040000 Sobic009G090250 Sobic009G090250 Sobic002G420800--Sobic009G090250 Sobic005G173900 Sobic005G173900 Sobic002G420800--Sobic005G173900 Sobic001G246400 Sobic001G246400 Sobic002G420800--Sobic001G246400 Sobic005G174500 Sobic005G174500 Sobic002G420800--Sobic005G174500 Sobic007G128400 Sobic007G128400 Sobic002G420800--Sobic007G128400 Sobic001G270600 Sobic001G270600 Sobic002G420800--Sobic001G270600 Sobic002G267700 Sobic002G267700 Sobic002G420800--Sobic002G267700 Sobic006G117300 Sobic006G117300 Sobic002G420800--Sobic006G117300 Sobic002G354800 Sobic002G354800 Sobic002G230400--Sobic002G354800 Sobic002G230400--Sobic006G186300 Sobic002G230400--Sobic004G075700 Sobic002G230400--Sobic006G143300 Sobic002G230400--Sobic004G014100 Sobic004G163700 Sobic004G163700 Sobic002G230400--Sobic004G163700 Sobic010G112700 Sobic010G112700 Sobic002G230400--Sobic010G112700 Sobic002G230400--Sobic002G343000 Sobic010G273800 Sobic010G273800 Sobic002G230400--Sobic010G273800 Sobic007G076500--Sobic001G067000 Sobic007G076500--Sobic004G196800 Sobic002G161600 Sobic002G161600 Sobic007G076500--Sobic002G161600 Sobic005G098700 Sobic005G098700 Sobic007G076500--Sobic005G098700 Sobic007G150700 Sobic007G150700 Sobic007G076500--Sobic007G150700 Sobic003G232332 Sobic003G232332 Sobic007G076500--Sobic003G232332 Sobic007G076500--Sobic007G199500 Sobic007G076500--Sobic003G026900 Sobic010G047300 Sobic010G047300 Sobic007G076500--Sobic010G047300 Sobic005G124400 Sobic005G124400 Sobic002G147466--Sobic005G124400 Sobic009G014900 Sobic009G014900 Sobic002G147466--Sobic009G014900 Sobic004G322901 Sobic004G322901 Sobic002G147466--Sobic004G322901 Sobic003G211600 Sobic003G211600 Sobic002G147466--Sobic003G211600 Sobic002G174500 Sobic002G174500 Sobic002G147466--Sobic002G174500 Sobic005G174200 Sobic005G174200 Sobic002G147466--Sobic005G174200 Sobic007G032500 Sobic007G032500 Sobic002G147466--Sobic007G032500 Sobic001G374600 Sobic001G374600 Sobic002G147466--Sobic001G374600 Sobic009G062300 Sobic009G062300 Sobic002G147466--Sobic009G062300 Sobic009G025100 Sobic009G025100 Sobic004G196800--Sobic009G025100 Sobic004G210000 Sobic004G210000 Sobic004G196800--Sobic004G210000 Sobic006G015800 Sobic006G015800 Sobic004G196800--Sobic006G015800 Sobic010G207400 Sobic010G207400 Sobic004G196800--Sobic010G207400 Sobic004G196800--Sobic010G047300 Sobic005G077900 Sobic005G077900 Sobic004G196800--Sobic005G077900 Sobic002G293100 Sobic002G293100 Sobic004G196800--Sobic002G293100 Sobic004G038900 Sobic004G038900 Sobic004G196800--Sobic004G038900 Sobic009G033500 Sobic009G033500 Sobic004G196800--Sobic009G033500 Sobic002G097100 Sobic002G097100 Sobic007G199500--Sobic002G097100 Sobic003G319050 Sobic003G319050 Sobic007G199500--Sobic003G319050 Sobic001G297700 Sobic001G297700 Sobic007G199500--Sobic001G297700 Sobic002G015500 Sobic002G015500 Sobic007G199500--Sobic002G015500 Sobic002G300900 Sobic002G300900 Sobic007G199500--Sobic002G300900 Sobic001G495700 Sobic001G495700 Sobic007G199500--Sobic001G495700 Sobic004G071100 Sobic004G071100 Sobic007G199500--Sobic004G071100 Sobic009G057100 Sobic009G057100 Sobic007G199500--Sobic009G057100 Sobic002G007300 Sobic002G007300 Sobic007G199500--Sobic002G007300 Sobic001G324800 Sobic001G324800 Sobic010G193700--Sobic001G324800 Sobic010G193700--Sobic004G196800 Sobic010G193700--Sobic004G322901 Sobic003G092600 Sobic003G092600 Sobic010G193700--Sobic003G092600 Sobic010G193700--Sobic009G014900 Sobic010G193700--Sobic002G174500 Sobic010G193700--Sobic006G015800 Sobic010G193700--Sobic002G147466 Sobic004G274500 Sobic004G274500 Sobic010G193700--Sobic004G274500
Octagon: transcription factors


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