Gene annotation
Transcriptome id Sobic.001G437300.1,Sobic.001G437300.2
Synonym SbLBD9, lateral organ boundaries, Sb01g041130, SbLBD9;lateral organ boundaries, LBD30, JLO
Functional annotation "domain confirmed by Pfam database, expressed in leaf and root, expression induced by IAA and BR treatments" (PubMedID : 20499123)
SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
DUF260 domain containing protein, putative, expressed
UniProt C5WQY6 , A0A1Z5SAP0
Pfam PF03195
Panther DB PTHR31529 PTHR31529:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45420 : LOB domain-containing protein 18
RAP-DB (Rice) LOC_Os03g14270.1 : DUF260 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a052884 , Zm00025a000663 , Zm00025a053423 , Zm00025a000662 , Zm00025a003841 , Zm00025a023282 , Zm00025a001561
Brachypodium KQJ96334 , KQK22581 , KQK23639 , KQK23638
Barley HORVU3Hr1G016690.3 , HORVU3Hr1G016690.2 , HORVU3Hr1G016690.1 , HORVU1Hr1G064640.3 , HORVU4Hr1G080160.1 , HORVU4Hr1G080160.3 , HORVU4Hr1G080160.2 , HORVU1Hr1G064640.2 , HORVU1Hr1G064640.4 , HORVU4Hr1G013630.9 , HORVU4Hr1G013630.8 , HORVU1Hr1G064640.1 , HORVU4Hr1G013630.5 , HORVU4Hr1G013630.4 , HORVU4Hr1G013630.7 , HORVU4Hr1G013630.6 , HORVU4Hr1G013630.1 , HORVU4Hr1G013630.3 , HORVU4Hr1G013630.2 , HORVU4Hr1G013630.11 , HORVU4Hr1G013630.10 , HORVU4Hr1G063160.6 , HORVU4Hr1G063160.4 , HORVU4Hr1G063160.5 , HORVU4Hr1G063160.2 , HORVU4Hr1G063160.3 , HORVU4Hr1G063160.1
Wheat TraesCS4B02G224600 , TraesCS4D02G225200 , TraesCS4A02G067300
Populus -


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cDNA sequences
Sobic.001G437300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G420800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stress responsive protein, putative, expressed -
2 Sobic.002G049800 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
3 Sobic.006G250200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
4 Sobic.005G226800 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
5 Sobic.009G139500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
6 Sobic.005G033600 heavy-metal-associated domain-containing protein, putative, expressed -
7 Sobic.002G267700 bZIP family transcription factor, putative, expressed -
8 Sobic.007G128400 expressed protein -
9 Sobic.003G211600 - -
10 Sobic.007G055300 MYB family transcription factor, putative, expressed -
11 Sobic.008G184400 aspartic proteinase, putative, expressed -
12 Sobic.010G010300 - -
13 Sobic.009G062300 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
14 Sobic.001G374600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@desiccation-related protein PCC13-62 precursor, putative, expressed -
15 Sobic.002G302200 expressed protein -
16 Sobic.007G066200 - -
17 Sobic.002G086500 alpha-1,2-fucosidase, putative, expressed K15923: AXY8, FUC95A, alpha-L-fucosidase 2
18 Sobic.008G164101 - -
19 Sobic.006G070830 - K01193: INV, beta-fructofuranosidase
20 Sobic.003G076400 ZOS1-07 - C2H2 zinc finger protein, expressed -


Gene co-expression network
sample Sobic001G437300 Sobic001G437300 Sobic002G420800 Sobic002G420800 Sobic001G437300--Sobic002G420800 Sobic002G049800 Sobic002G049800 Sobic001G437300--Sobic002G049800 Sobic006G250200 Sobic006G250200 Sobic001G437300--Sobic006G250200 Sobic005G226800 Sobic005G226800 Sobic001G437300--Sobic005G226800 Sobic009G139500 Sobic009G139500 Sobic001G437300--Sobic009G139500 Sobic005G033600 Sobic005G033600 Sobic001G437300--Sobic005G033600 Sobic002G267700 Sobic002G267700 Sobic001G437300--Sobic002G267700 Sobic007G128400 Sobic007G128400 Sobic001G437300--Sobic007G128400 Sobic003G211600 Sobic003G211600 Sobic001G437300--Sobic003G211600 Sobic007G040000 Sobic007G040000 Sobic002G420800--Sobic007G040000 Sobic009G090250 Sobic009G090250 Sobic002G420800--Sobic009G090250 Sobic005G173900 Sobic005G173900 Sobic002G420800--Sobic005G173900 Sobic001G246400 Sobic001G246400 Sobic002G420800--Sobic001G246400 Sobic005G174500 Sobic005G174500 Sobic002G420800--Sobic005G174500 Sobic002G420800--Sobic007G128400 Sobic001G270600 Sobic001G270600 Sobic002G420800--Sobic001G270600 Sobic002G420800--Sobic002G267700 Sobic006G117300 Sobic006G117300 Sobic002G420800--Sobic006G117300 Sobic005G037800 Sobic005G037800 Sobic002G049800--Sobic005G037800 Sobic008G184400 Sobic008G184400 Sobic002G049800--Sobic008G184400 Sobic008G181200 Sobic008G181200 Sobic002G049800--Sobic008G181200 Sobic010G137700 Sobic010G137700 Sobic002G049800--Sobic010G137700 Sobic005G177200 Sobic005G177200 Sobic002G049800--Sobic005G177200 Sobic002G049800--Sobic005G226800 Sobic001G323500 Sobic001G323500 Sobic002G049800--Sobic001G323500 Sobic009G006800 Sobic009G006800 Sobic002G049800--Sobic009G006800 Sobic003G135201 Sobic003G135201 Sobic002G049800--Sobic003G135201 Sobic006G250200--Sobic002G049800 Sobic006G250200--Sobic008G181200 Sobic006G250200--Sobic005G037800 Sobic006G250200--Sobic010G137700 Sobic006G250200--Sobic005G226800 Sobic006G250200--Sobic005G177200 Sobic002G238900 Sobic002G238900 Sobic006G250200--Sobic002G238900 Sobic009G062300 Sobic009G062300 Sobic006G250200--Sobic009G062300 Sobic006G250200--Sobic008G184400 Sobic005G226800--Sobic009G062300 Sobic007G066200 Sobic007G066200 Sobic005G226800--Sobic007G066200 Sobic005G226800--Sobic003G211600 Sobic005G124400 Sobic005G124400 Sobic005G226800--Sobic005G124400 Sobic001G269650 Sobic001G269650 Sobic005G226800--Sobic001G269650 Sobic001G374600 Sobic001G374600 Sobic005G226800--Sobic001G374600 Sobic005G042400 Sobic005G042400 Sobic005G226800--Sobic005G042400 Sobic001G495700 Sobic001G495700 Sobic005G226800--Sobic001G495700 Sobic005G174200 Sobic005G174200 Sobic005G226800--Sobic005G174200 Sobic010G010300 Sobic010G010300 Sobic009G139500--Sobic010G010300 Sobic009G139500--Sobic005G033600 Sobic003G076400 Sobic003G076400 Sobic009G139500--Sobic003G076400 Sobic002G058900 Sobic002G058900 Sobic009G139500--Sobic002G058900 Sobic009G139500--Sobic002G267700 Sobic002G101200 Sobic002G101200 Sobic009G139500--Sobic002G101200 Sobic006G031000 Sobic006G031000 Sobic009G139500--Sobic006G031000 Sobic002G015400 Sobic002G015400 Sobic009G139500--Sobic002G015400 Sobic008G159300 Sobic008G159300 Sobic009G139500--Sobic008G159300 Sobic005G033600--Sobic005G174200 Sobic005G033600--Sobic002G267700 Sobic007G032500 Sobic007G032500 Sobic005G033600--Sobic007G032500 Sobic005G033600--Sobic009G139500 Sobic005G033600--Sobic003G211600 Sobic006G070830 Sobic006G070830 Sobic005G033600--Sobic006G070830 Sobic005G033600--Sobic001G374600 Sobic005G033600--Sobic002G015400 Sobic003G091500 Sobic003G091500 Sobic005G033600--Sobic003G091500 Sobic002G267700--Sobic005G033600 Sobic002G267700--Sobic006G070830 Sobic008G031400 Sobic008G031400 Sobic002G267700--Sobic008G031400 Sobic002G267700--Sobic006G031000 Sobic002G267700--Sobic005G174500 Sobic002G089500 Sobic002G089500 Sobic002G267700--Sobic002G089500 Sobic005G032500 Sobic005G032500 Sobic002G267700--Sobic005G032500 Sobic002G267700--Sobic003G091500 Sobic002G267700--Sobic006G117300 Sobic007G128400--Sobic006G117300 Sobic007G128400--Sobic007G040000 Sobic007G128400--Sobic005G174500 Sobic007G128400--Sobic009G090250 Sobic007G128400--Sobic001G246400 Sobic003G321500 Sobic003G321500 Sobic007G128400--Sobic003G321500 Sobic007G128400--Sobic002G089500 Sobic007G128400--Sobic002G267700 Sobic001G392900 Sobic001G392900 Sobic007G128400--Sobic001G392900 Sobic003G211600--Sobic005G226800 Sobic003G211600--Sobic007G066200 Sobic003G211600--Sobic001G374600 Sobic003G211600--Sobic005G174200 Sobic003G211600--Sobic009G062300 Sobic003G211600--Sobic007G032500 Sobic003G211600--Sobic005G173900 Sobic003G211600--Sobic001G495700 Sobic003G211600--Sobic005G033600
Octagon: transcription factors


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