Gene annotation
Transcriptome id Sobic.005G226800.2,Sobic.005G226800.1
Synonym Sb05g027503, PUM1, APUM1
Functional annotation pumilio-family RNA binding protein, putative, expressed
UniProt A0A1B6PU54
Pfam PF00806
Panther DB PTHR12537 PTHR12537:SF74
NCBI CDD -
KEGG Orthology K17943; pumilio RNA-binding family
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT2G29200 : pumilio 1
RAP-DB (Rice) LOC_Os01g74030.1 : pumilio-family RNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a045141
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G062300 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
2 Sobic.007G066200 - -
3 Sobic.003G211600 - -
4 Sobic.005G124400 - -
5 Sobic.001G269650 - -
6 Sobic.001G374600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./early senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@desiccation-related protein PCC13-62 precursor, putative, expressed -
7 Sobic.005G042400 expressed protein -
8 Sobic.001G495700 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
9 Sobic.005G174200 - -
10 Sobic.010G133150 - -
11 Sobic.007G032500 WD domain, G-beta repeat domain containing protein, expressed K11462: polycomb protein EED
12 Sobic.005G173900 - -
13 Sobic.005G033600 heavy-metal-associated domain-containing protein, putative, expressed -
14 Sobic.008G164101 - -
15 Sobic.003G103100 - -
16 Sobic.002G049800 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
17 Sobic.002G015500 OsFBD13 - F-box and FBD domain containing protein, expressed -
18 Sobic.008G181200 - -
19 Sobic.010G137700 - -
20 Sobic.002G097100 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -


Gene co-expression network
sample Sobic005G226800 Sobic005G226800 Sobic009G062300 Sobic009G062300 Sobic005G226800--Sobic009G062300 Sobic007G066200 Sobic007G066200 Sobic005G226800--Sobic007G066200 Sobic003G211600 Sobic003G211600 Sobic005G226800--Sobic003G211600 Sobic005G124400 Sobic005G124400 Sobic005G226800--Sobic005G124400 Sobic001G269650 Sobic001G269650 Sobic005G226800--Sobic001G269650 Sobic001G374600 Sobic001G374600 Sobic005G226800--Sobic001G374600 Sobic005G042400 Sobic005G042400 Sobic005G226800--Sobic005G042400 Sobic001G495700 Sobic001G495700 Sobic005G226800--Sobic001G495700 Sobic005G174200 Sobic005G174200 Sobic005G226800--Sobic005G174200 Sobic009G062300--Sobic005G226800 Sobic009G062300--Sobic003G211600 Sobic009G062300--Sobic005G124400 Sobic009G062300--Sobic007G066200 Sobic009G062300--Sobic001G269650 Sobic009G062300--Sobic005G042400 Sobic003G103100 Sobic003G103100 Sobic009G062300--Sobic003G103100 Sobic009G062300--Sobic001G495700 Sobic010G133150 Sobic010G133150 Sobic009G062300--Sobic010G133150 Sobic007G066200--Sobic005G226800 Sobic007G066200--Sobic003G211600 Sobic007G066200--Sobic009G062300 Sobic007G066200--Sobic001G269650 Sobic007G066200--Sobic005G124400 Sobic007G066200--Sobic001G374600 Sobic005G033600 Sobic005G033600 Sobic007G066200--Sobic005G033600 Sobic007G066200--Sobic001G495700 Sobic007G066200--Sobic005G174200 Sobic003G211600--Sobic005G226800 Sobic003G211600--Sobic007G066200 Sobic003G211600--Sobic001G374600 Sobic003G211600--Sobic005G174200 Sobic003G211600--Sobic009G062300 Sobic007G032500 Sobic007G032500 Sobic003G211600--Sobic007G032500 Sobic005G173900 Sobic005G173900 Sobic003G211600--Sobic005G173900 Sobic003G211600--Sobic001G495700 Sobic003G211600--Sobic005G033600 Sobic005G124400--Sobic009G062300 Sobic005G124400--Sobic005G226800 Sobic005G124400--Sobic003G103100 Sobic005G124400--Sobic005G042400 Sobic005G124400--Sobic001G269650 Sobic005G124400--Sobic007G066200 Sobic005G124400--Sobic003G211600 Sobic004G029700 Sobic004G029700 Sobic005G124400--Sobic004G029700 Sobic005G124400--Sobic010G133150 Sobic001G269650--Sobic007G066200 Sobic001G269650--Sobic009G062300 Sobic005G176875 Sobic005G176875 Sobic001G269650--Sobic005G176875 Sobic001G269650--Sobic005G226800 Sobic001G269650--Sobic001G495700 Sobic008G184500 Sobic008G184500 Sobic001G269650--Sobic008G184500 Sobic001G269650--Sobic003G211600 Sobic002G015500 Sobic002G015500 Sobic001G269650--Sobic002G015500 Sobic001G269650--Sobic005G124400 Sobic001G374600--Sobic005G174200 Sobic001G374600--Sobic003G211600 Sobic001G374600--Sobic007G032500 Sobic001G374600--Sobic005G173900 Sobic001G374600--Sobic005G033600 Sobic006G070830 Sobic006G070830 Sobic001G374600--Sobic006G070830 Sobic001G374600--Sobic001G495700 Sobic003G091500 Sobic003G091500 Sobic001G374600--Sobic003G091500 Sobic008G184100 Sobic008G184100 Sobic001G374600--Sobic008G184100 Sobic010G029800 Sobic010G029800 Sobic005G042400--Sobic010G029800 Sobic005G042400--Sobic003G103100 Sobic004G008700 Sobic004G008700 Sobic005G042400--Sobic004G008700 Sobic005G052200 Sobic005G052200 Sobic005G042400--Sobic005G052200 Sobic005G042400--Sobic005G124400 Sobic005G042400--Sobic009G062300 Sobic010G137600 Sobic010G137600 Sobic005G042400--Sobic010G137600 Sobic004G114700 Sobic004G114700 Sobic005G042400--Sobic004G114700 Sobic005G042400--Sobic005G226800 Sobic001G495700--Sobic002G015500 Sobic001G495700--Sobic010G133150 Sobic002G097100 Sobic002G097100 Sobic001G495700--Sobic002G097100 Sobic001G495700--Sobic007G032500 Sobic001G495700--Sobic005G174200 Sobic001G511400 Sobic001G511400 Sobic001G495700--Sobic001G511400 Sobic002G015400 Sobic002G015400 Sobic001G495700--Sobic002G015400 Sobic009G058300 Sobic009G058300 Sobic001G495700--Sobic009G058300 Sobic007G199500 Sobic007G199500 Sobic001G495700--Sobic007G199500 Sobic005G174200--Sobic007G032500 Sobic005G174200--Sobic001G374600 Sobic002G108300 Sobic002G108300 Sobic005G174200--Sobic002G108300 Sobic005G174200--Sobic003G211600 Sobic005G174200--Sobic001G495700 Sobic005G174200--Sobic009G058300 Sobic005G174200--Sobic005G033600 Sobic005G174200--Sobic008G184100 Sobic005G174200--Sobic003G091500
Octagon: transcription factors


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