Gene annotation
Transcriptome id Sobic.004G242000.1
Synonym Sb04g028280, RAC10, ATRAC10, ATROP11, ARAC10
Functional annotation ras-related protein, putative, expressed
UniProt C5XYW6
Pfam PF08477
Panther DB PTHR24072 PTHR24072:SF149
NCBI CDD KOG0393; Ras-related small GTPase, Rho type
KEGG Orthology K04392; Ras-related C3 botulinum toxin substrate 1
Gene Ontology GO:0007264; small GTPase mediated signal transduction GO:0005525GTP binding


Orthologs (automatic annotation)
TAIR AT5G62880 : RAC-like 10
RAP-DB (Rice) LOC_Os02g50860.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a049438 , Zm00025a033216 , Zm00025a044215 , Zm00025a022001 , Zm00025a037935
Brachypodium KQK05418 , KQK01965 , KQK01966
Barley HORVU6Hr1G076210.8 , HORVU6Hr1G076210.9 , HORVU6Hr1G076210.4 , HORVU6Hr1G076210.5 , HORVU6Hr1G076210.6 , HORVU6Hr1G076210.7 , HORVU6Hr1G076210.1 , HORVU6Hr1G076210.2 , HORVU6Hr1G076210.3 , HORVU7Hr1G038980.9 , HORVU7Hr1G038980.8 , HORVU7Hr1G038980.7 , HORVU7Hr1G038980.5 , HORVU7Hr1G038980.4 , HORVU7Hr1G038980.3 , HORVU7Hr1G038980.1 , HORVU6Hr1G076210.10 , HORVU7Hr1G038980.17 , HORVU7Hr1G038980.16 , HORVU7Hr1G038980.15 , HORVU7Hr1G038980.14 , HORVU7Hr1G038980.13 , HORVU7Hr1G038980.12 , HORVU7Hr1G038980.11 , HORVU7Hr1G038980.10 , HORVU7Hr1G038980.18
Wheat TraesCS6B02G338000 , TraesCS7B02G096200 , TraesCS7D02G192400 , TraesCS6A02G309000 , TraesCS6D02G288300 , TraesCS7A02G191400 , TraesCS6A02G309000
Populus -


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cDNA sequences
Sobic.004G242000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G256200 expressed protein -
2 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -
3 Sobic.003G051100 BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed -
4 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
5 Sobic.002G388100 ras-related protein, putative, expressed K07904: Ras-related protein Rab-11A
6 Sobic.009G105000 leaf senescence related protein, putative, expressed -
7 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
8 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
9 Sobic.009G060400 proline-rich family protein, putative, expressed -
10 Sobic.001G199300 GIL1, putative, expressed -
11 Sobic.001G123201 - -
12 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
13 Sobic.001G282000 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
14 Sobic.003G307900 BSD domain containing protein, expressed -
15 Sobic.003G083900 metallo-beta-lactamase family protein, putative, expressed -
16 Sobic.008G169800 galactosyltransferase family protein, putative, expressed -
17 Sobic.004G036800 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
18 Sobic.005G187500 GRF-interacting factor 2, putative, expressed -
19 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
20 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins


Gene co-expression network
sample Sobic004G242000 Sobic004G242000 Sobic010G256200 Sobic010G256200 Sobic004G242000--Sobic010G256200 Sobic002G252900 Sobic002G252900 Sobic004G242000--Sobic002G252900 Sobic003G051100 Sobic003G051100 Sobic004G242000--Sobic003G051100 Sobic004G015300 Sobic004G015300 Sobic004G242000--Sobic004G015300 Sobic002G388100 Sobic002G388100 Sobic004G242000--Sobic002G388100 Sobic009G105000 Sobic009G105000 Sobic004G242000--Sobic009G105000 Sobic003G415100 Sobic003G415100 Sobic004G242000--Sobic003G415100 Sobic002G051200 Sobic002G051200 Sobic004G242000--Sobic002G051200 Sobic009G060400 Sobic009G060400 Sobic004G242000--Sobic009G060400 Sobic001G157600 Sobic001G157600 Sobic010G256200--Sobic001G157600 Sobic001G123201 Sobic001G123201 Sobic010G256200--Sobic001G123201 Sobic010G256200--Sobic004G242000 Sobic010G256200--Sobic002G051200 Sobic001G154400 Sobic001G154400 Sobic010G256200--Sobic001G154400 Sobic010G256200--Sobic009G060400 Sobic009G030400 Sobic009G030400 Sobic010G256200--Sobic009G030400 Sobic004G318400 Sobic004G318400 Sobic010G256200--Sobic004G318400 Sobic004G272900 Sobic004G272900 Sobic010G256200--Sobic004G272900 Sobic002G062500 Sobic002G062500 Sobic002G252900--Sobic002G062500 Sobic002G252900--Sobic004G242000 Sobic002G252900--Sobic009G030400 Sobic004G345100 Sobic004G345100 Sobic002G252900--Sobic004G345100 Sobic002G385300 Sobic002G385300 Sobic002G252900--Sobic002G385300 Sobic002G252900--Sobic009G060400 Sobic010G250100 Sobic010G250100 Sobic002G252900--Sobic010G250100 Sobic002G390400 Sobic002G390400 Sobic002G252900--Sobic002G390400 Sobic002G252900--Sobic010G256200 Sobic003G051100--Sobic004G242000 Sobic001G005800 Sobic001G005800 Sobic003G051100--Sobic001G005800 Sobic009G212100 Sobic009G212100 Sobic003G051100--Sobic009G212100 Sobic009G254000 Sobic009G254000 Sobic003G051100--Sobic009G254000 Sobic009G167100 Sobic009G167100 Sobic003G051100--Sobic009G167100 Sobic007G084200 Sobic007G084200 Sobic003G051100--Sobic007G084200 Sobic006G218900 Sobic006G218900 Sobic003G051100--Sobic006G218900 Sobic004G315700 Sobic004G315700 Sobic003G051100--Sobic004G315700 Sobic003G051100--Sobic003G415100 Sobic001G296800 Sobic001G296800 Sobic004G015300--Sobic001G296800 Sobic006G122200 Sobic006G122200 Sobic004G015300--Sobic006G122200 Sobic004G015300--Sobic009G212100 Sobic004G015300--Sobic004G315700 Sobic005G047000 Sobic005G047000 Sobic004G015300--Sobic005G047000 Sobic001G487200 Sobic001G487200 Sobic004G015300--Sobic001G487200 Sobic006G245700 Sobic006G245700 Sobic004G015300--Sobic006G245700 Sobic004G015300--Sobic007G084200 Sobic001G115500 Sobic001G115500 Sobic004G015300--Sobic001G115500 Sobic002G388100--Sobic004G242000 Sobic002G388100--Sobic002G051200 Sobic002G388100--Sobic010G256200 Sobic002G388100--Sobic001G154400 Sobic001G448200 Sobic001G448200 Sobic002G388100--Sobic001G448200 Sobic002G356800 Sobic002G356800 Sobic002G388100--Sobic002G356800 Sobic002G388100--Sobic004G345100 Sobic001G349400 Sobic001G349400 Sobic002G388100--Sobic001G349400 Sobic006G013900 Sobic006G013900 Sobic002G388100--Sobic006G013900 Sobic009G105000--Sobic004G242000 Sobic009G105000--Sobic003G051100 Sobic009G105000--Sobic004G015300 Sobic009G105000--Sobic007G084200 Sobic009G192500 Sobic009G192500 Sobic009G105000--Sobic009G192500 Sobic009G105000--Sobic002G388100 Sobic001G116100 Sobic001G116100 Sobic009G105000--Sobic001G116100 Sobic003G345000 Sobic003G345000 Sobic009G105000--Sobic003G345000 Sobic009G105000--Sobic006G218900 Sobic001G346700 Sobic001G346700 Sobic003G415100--Sobic001G346700 Sobic009G069200 Sobic009G069200 Sobic003G415100--Sobic009G069200 Sobic003G415100--Sobic002G390400 Sobic009G257500 Sobic009G257500 Sobic003G415100--Sobic009G257500 Sobic001G090300 Sobic001G090300 Sobic003G415100--Sobic001G090300 Sobic003G415100--Sobic001G123201 Sobic006G126600 Sobic006G126600 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G253400 Sobic003G253400 Sobic003G415100--Sobic003G253400 Sobic002G051200--Sobic006G013900 Sobic006G231700 Sobic006G231700 Sobic002G051200--Sobic006G231700 Sobic002G051200--Sobic010G256200 Sobic002G051200--Sobic001G154400 Sobic002G051200--Sobic001G349400 Sobic003G358300 Sobic003G358300 Sobic002G051200--Sobic003G358300 Sobic003G434000 Sobic003G434000 Sobic002G051200--Sobic003G434000 Sobic004G137900 Sobic004G137900 Sobic002G051200--Sobic004G137900 Sobic009G052500 Sobic009G052500 Sobic002G051200--Sobic009G052500 Sobic009G060400--Sobic006G245700 Sobic007G036800 Sobic007G036800 Sobic009G060400--Sobic007G036800 Sobic009G060400--Sobic010G256200 Sobic009G060400--Sobic001G346700 Sobic001G425200 Sobic001G425200 Sobic009G060400--Sobic001G425200 Sobic003G304800 Sobic003G304800 Sobic009G060400--Sobic003G304800 Sobic009G060400--Sobic001G115500 Sobic009G060400--Sobic006G091850 Sobic008G125000 Sobic008G125000 Sobic009G060400--Sobic008G125000
Octagon: transcription factors


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