Gene annotation
Transcriptome id Sobic.002G388100.1,Sobic.002G388100.2
Synonym AtRABA5a, Sb02g040430, RABA5a
Functional annotation ras-related protein, putative, expressed
UniProt C5X394
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF430
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT5G47520 : RAB GTPase homolog A5A
RAP-DB (Rice) LOC_Os07g44040.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a048881
Brachypodium KQK15043 , KQK15042
Barley HORVU2Hr1G027660.5 , HORVU2Hr1G027660.4 , HORVU2Hr1G027660.3 , HORVU2Hr1G027660.2
Wheat TraesCS2B02G178600 , TraesCS2A02G153500 , TraesCS2D02G158800
Populus -


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cDNA sequences
Sobic.002G388100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G242000 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
2 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
3 Sobic.010G256200 expressed protein -
4 Sobic.001G154400 expp1 protein precursor, putative, expressed -
5 Sobic.001G448200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
6 Sobic.002G356800 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.004G345100 expressed protein -
8 Sobic.001G349400 heat shock protein DnaJ, putative, expressed -
9 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
10 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
11 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
12 Sobic.001G424500 mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
13 Sobic.006G096300 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
15 Sobic.009G105000 leaf senescence related protein, putative, expressed -
16 Sobic.001G127400 yippee zinc-binding protein, putative, expressed -
17 Sobic.001G285300 expressed protein -
18 Sobic.006G120800 transglutaminase, putative, expressed -
19 Sobic.005G206700 WD domain, G-beta repeat domain containing protein, expressed K12602: WDR61, REC14, WD repeat-containing protein 61
20 Sobic.010G257400 expressed protein -


Gene co-expression network
sample Sobic002G388100 Sobic002G388100 Sobic004G242000 Sobic004G242000 Sobic002G388100--Sobic004G242000 Sobic002G051200 Sobic002G051200 Sobic002G388100--Sobic002G051200 Sobic010G256200 Sobic010G256200 Sobic002G388100--Sobic010G256200 Sobic001G154400 Sobic001G154400 Sobic002G388100--Sobic001G154400 Sobic001G448200 Sobic001G448200 Sobic002G388100--Sobic001G448200 Sobic002G356800 Sobic002G356800 Sobic002G388100--Sobic002G356800 Sobic004G345100 Sobic004G345100 Sobic002G388100--Sobic004G345100 Sobic001G349400 Sobic001G349400 Sobic002G388100--Sobic001G349400 Sobic006G013900 Sobic006G013900 Sobic002G388100--Sobic006G013900 Sobic004G242000--Sobic010G256200 Sobic002G252900 Sobic002G252900 Sobic004G242000--Sobic002G252900 Sobic003G051100 Sobic003G051100 Sobic004G242000--Sobic003G051100 Sobic004G015300 Sobic004G015300 Sobic004G242000--Sobic004G015300 Sobic004G242000--Sobic002G388100 Sobic009G105000 Sobic009G105000 Sobic004G242000--Sobic009G105000 Sobic003G415100 Sobic003G415100 Sobic004G242000--Sobic003G415100 Sobic004G242000--Sobic002G051200 Sobic009G060400 Sobic009G060400 Sobic004G242000--Sobic009G060400 Sobic002G051200--Sobic006G013900 Sobic006G231700 Sobic006G231700 Sobic002G051200--Sobic006G231700 Sobic002G051200--Sobic010G256200 Sobic002G051200--Sobic001G154400 Sobic002G051200--Sobic001G349400 Sobic003G358300 Sobic003G358300 Sobic002G051200--Sobic003G358300 Sobic003G434000 Sobic003G434000 Sobic002G051200--Sobic003G434000 Sobic004G137900 Sobic004G137900 Sobic002G051200--Sobic004G137900 Sobic009G052500 Sobic009G052500 Sobic002G051200--Sobic009G052500 Sobic001G157600 Sobic001G157600 Sobic010G256200--Sobic001G157600 Sobic001G123201 Sobic001G123201 Sobic010G256200--Sobic001G123201 Sobic010G256200--Sobic004G242000 Sobic010G256200--Sobic002G051200 Sobic010G256200--Sobic001G154400 Sobic010G256200--Sobic009G060400 Sobic009G030400 Sobic009G030400 Sobic010G256200--Sobic009G030400 Sobic004G318400 Sobic004G318400 Sobic010G256200--Sobic004G318400 Sobic004G272900 Sobic004G272900 Sobic010G256200--Sobic004G272900 Sobic002G113500 Sobic002G113500 Sobic001G154400--Sobic002G113500 Sobic001G154400--Sobic006G013900 Sobic001G336050 Sobic001G336050 Sobic001G154400--Sobic001G336050 Sobic004G102900 Sobic004G102900 Sobic001G154400--Sobic004G102900 Sobic001G154400--Sobic004G318400 Sobic001G154400--Sobic002G051200 Sobic004G063500 Sobic004G063500 Sobic001G154400--Sobic004G063500 Sobic001G154400--Sobic010G256200 Sobic003G325700 Sobic003G325700 Sobic001G154400--Sobic003G325700 Sobic001G285300 Sobic001G285300 Sobic001G448200--Sobic001G285300 Sobic008G111700 Sobic008G111700 Sobic001G448200--Sobic008G111700 Sobic003G118400 Sobic003G118400 Sobic001G448200--Sobic003G118400 Sobic006G094600 Sobic006G094600 Sobic001G448200--Sobic006G094600 Sobic003G247900 Sobic003G247900 Sobic001G448200--Sobic003G247900 Sobic003G038600 Sobic003G038600 Sobic001G448200--Sobic003G038600 Sobic004G031800 Sobic004G031800 Sobic001G448200--Sobic004G031800 Sobic010G219100 Sobic010G219100 Sobic001G448200--Sobic010G219100 Sobic009G201800 Sobic009G201800 Sobic001G448200--Sobic009G201800 Sobic003G217500 Sobic003G217500 Sobic002G356800--Sobic003G217500 Sobic002G356800--Sobic001G154400 Sobic002G356800--Sobic004G318400 Sobic003G304500 Sobic003G304500 Sobic002G356800--Sobic003G304500 Sobic009G144500 Sobic009G144500 Sobic002G356800--Sobic009G144500 Sobic004G250600 Sobic004G250600 Sobic002G356800--Sobic004G250600 Sobic002G356800--Sobic006G013900 Sobic009G148000 Sobic009G148000 Sobic002G356800--Sobic009G148000 Sobic010G177100 Sobic010G177100 Sobic002G356800--Sobic010G177100 Sobic006G072400 Sobic006G072400 Sobic004G345100--Sobic006G072400 Sobic004G028800 Sobic004G028800 Sobic004G345100--Sobic004G028800 Sobic003G004500 Sobic003G004500 Sobic004G345100--Sobic003G004500 Sobic006G261100 Sobic006G261100 Sobic004G345100--Sobic006G261100 Sobic002G359900 Sobic002G359900 Sobic004G345100--Sobic002G359900 Sobic004G345100--Sobic002G252900 Sobic006G120800 Sobic006G120800 Sobic004G345100--Sobic006G120800 Sobic001G458200 Sobic001G458200 Sobic004G345100--Sobic001G458200 Sobic004G345100--Sobic003G415100 Sobic001G349400--Sobic008G111700 Sobic001G349400--Sobic001G285300 Sobic001G349400--Sobic003G434000 Sobic001G349400--Sobic002G051200 Sobic003G024800 Sobic003G024800 Sobic001G349400--Sobic003G024800 Sobic006G143500 Sobic006G143500 Sobic001G349400--Sobic006G143500 Sobic009G036900 Sobic009G036900 Sobic001G349400--Sobic009G036900 Sobic001G127400 Sobic001G127400 Sobic001G349400--Sobic001G127400 Sobic003G420700 Sobic003G420700 Sobic001G349400--Sobic003G420700 Sobic006G013900--Sobic006G231700 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic006G013900--Sobic004G137900 Sobic006G013900--Sobic001G154400 Sobic004G343600 Sobic004G343600 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic002G386300 Sobic002G386300 Sobic006G013900--Sobic002G386300
Octagon: transcription factors


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