Gene annotation
Transcriptome id Sobic.005G206700.1
Synonym Sb05g026120, VIP3
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5Y7G6
Pfam PF00400
Panther DB PTHR22847
NCBI CDD KOG0279; G protein beta subunit-like protein KOG0265U5 snRNP-specific protein-like factor and related proteins KOG0277Peroxisomal targeting signal type 2 receptor
KEGG Orthology K12602; WDR61, REC14, WD repeat-containing protein 61
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G29830 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os11g43890.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a029182
Brachypodium KQJ87404
Barley HORVU4Hr1G033170.1 , HORVU4Hr1G033170.2
Wheat TraesCS4B02G144300 , TraesCS4A02G165700 , TraesCS4D02G145700
Populus -


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cDNA sequences
Sobic.005G206700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
2 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
3 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
4 Sobic.010G054200 peptidase, T1 family, putative, expressed K02728: 20S proteasome subunit alpha 3
5 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
6 Sobic.001G233800 expressed protein -
7 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
8 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
9 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
10 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
11 Sobic.002G378401 - -
12 Sobic.004G325200 60S ribosome subunit biogenesis protein NIP7, putative, expressed K07565: 60S ribosome subunit biogenesis protein NIP7
13 Sobic.009G124400 similar to Putative uncharacterized protein(PubMedID : 29862293)@LSM domain containing protein, expressed K12624: U6 snRNA-associated Sm-like protein LSm5
14 Sobic.003G190800 GA18326-PA, putative, expressed -
15 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
16 Sobic.006G079900 COP9 signalosome complex subunit 8, putative, expressed K12181: COPS8, COP9 signalosome complex subunit 8
17 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
18 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
19 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
20 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4


Gene co-expression network
sample Sobic005G206700 Sobic005G206700 Sobic006G231700 Sobic006G231700 Sobic005G206700--Sobic006G231700 Sobic006G013900 Sobic006G013900 Sobic005G206700--Sobic006G013900 Sobic004G137900 Sobic004G137900 Sobic005G206700--Sobic004G137900 Sobic010G054200 Sobic010G054200 Sobic005G206700--Sobic010G054200 Sobic004G063500 Sobic004G063500 Sobic005G206700--Sobic004G063500 Sobic001G233800 Sobic001G233800 Sobic005G206700--Sobic001G233800 Sobic007G152400 Sobic007G152400 Sobic005G206700--Sobic007G152400 Sobic009G120100 Sobic009G120100 Sobic005G206700--Sobic009G120100 Sobic002G331300 Sobic002G331300 Sobic005G206700--Sobic002G331300 Sobic005G111100 Sobic005G111100 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G231700--Sobic006G013900 Sobic003G358300 Sobic003G358300 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic006G231700--Sobic004G137900 Sobic006G013900--Sobic006G231700 Sobic002G051200 Sobic002G051200 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic006G013900--Sobic004G137900 Sobic001G154400 Sobic001G154400 Sobic006G013900--Sobic001G154400 Sobic004G343600 Sobic004G343600 Sobic006G013900--Sobic004G343600 Sobic006G013900--Sobic002G331300 Sobic006G013900--Sobic005G206700 Sobic002G386300 Sobic002G386300 Sobic006G013900--Sobic002G386300 Sobic004G012800 Sobic004G012800 Sobic004G137900--Sobic004G012800 Sobic004G137900--Sobic006G231700 Sobic004G137900--Sobic003G358300 Sobic004G137900--Sobic006G013900 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic004G137900--Sobic009G120100 Sobic004G137900--Sobic003G129800 Sobic004G137900--Sobic005G111100 Sobic006G081100 Sobic006G081100 Sobic010G054200--Sobic006G081100 Sobic003G249700 Sobic003G249700 Sobic010G054200--Sobic003G249700 Sobic001G058900 Sobic001G058900 Sobic010G054200--Sobic001G058900 Sobic009G223300 Sobic009G223300 Sobic010G054200--Sobic009G223300 Sobic010G054200--Sobic003G129800 Sobic001G225700 Sobic001G225700 Sobic010G054200--Sobic001G225700 Sobic009G233400 Sobic009G233400 Sobic010G054200--Sobic009G233400 Sobic003G150000 Sobic003G150000 Sobic010G054200--Sobic003G150000 Sobic002G372400 Sobic002G372400 Sobic010G054200--Sobic002G372400 Sobic004G063500--Sobic009G120100 Sobic003G325700 Sobic003G325700 Sobic004G063500--Sobic003G325700 Sobic003G063200 Sobic003G063200 Sobic004G063500--Sobic003G063200 Sobic001G066700 Sobic001G066700 Sobic004G063500--Sobic001G066700 Sobic010G266300 Sobic010G266300 Sobic004G063500--Sobic010G266300 Sobic009G216800 Sobic009G216800 Sobic004G063500--Sobic009G216800 Sobic003G403400 Sobic003G403400 Sobic004G063500--Sobic003G403400 Sobic002G113500 Sobic002G113500 Sobic004G063500--Sobic002G113500 Sobic004G063500--Sobic006G231700 Sobic001G233800--Sobic006G231700 Sobic002G378401 Sobic002G378401 Sobic001G233800--Sobic002G378401 Sobic001G233800--Sobic005G206700 Sobic001G233800--Sobic006G013900 Sobic001G233800--Sobic001G094500 Sobic003G367900 Sobic003G367900 Sobic001G233800--Sobic003G367900 Sobic001G233800--Sobic004G137900 Sobic001G233800--Sobic002G051200 Sobic002G359900 Sobic002G359900 Sobic001G233800--Sobic002G359900 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic002G428200 Sobic002G428200 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic008G137600 Sobic008G137600 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic007G152400--Sobic002G331300 Sobic009G120100--Sobic004G063500 Sobic009G120100--Sobic007G152400 Sobic009G120100--Sobic001G286300 Sobic006G095200 Sobic006G095200 Sobic009G120100--Sobic006G095200 Sobic009G120100--Sobic002G331300 Sobic009G070200 Sobic009G070200 Sobic009G120100--Sobic009G070200 Sobic003G233500 Sobic003G233500 Sobic009G120100--Sobic003G233500 Sobic009G120100--Sobic005G111100 Sobic007G029400 Sobic007G029400 Sobic009G120100--Sobic007G029400 Sobic006G115000 Sobic006G115000 Sobic002G331300--Sobic006G115000 Sobic005G050500 Sobic005G050500 Sobic002G331300--Sobic005G050500 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic004G342400 Sobic004G342400 Sobic002G331300--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic002G331300--Sobic001G334300 Sobic002G331300--Sobic009G233400 Sobic009G227400 Sobic009G227400 Sobic002G331300--Sobic009G227400 Sobic010G023900 Sobic010G023900 Sobic002G331300--Sobic010G023900
Octagon: transcription factors


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