Gene annotation
Transcriptome id Sobic.006G079900.2
Synonym COP9, FUS7, CSN8, EMB143, Sb06g016660
Functional annotation COP9 signalosome complex subunit 8, putative, expressed
UniProt A0A1Z5RCT9
Pfam PF10075
Panther DB PTHR13339
NCBI CDD KOG4414; COP9 signalosome, subunit CSN8
KEGG Orthology K12181; COPS8, COP9 signalosome complex subunit 8
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14110 : COP9 signalosome, subunit CSN8
RAP-DB (Rice) LOC_Os04g34930.1 : COP9 signalosome complex subunit 8, putative, expressed
MaizeGDB (Corn) Zm00025a011413 , Zm00025a056052
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.006G079900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
2 Sobic.009G124400 similar to Putative uncharacterized protein(PubMedID : 29862293)@LSM domain containing protein, expressed K12624: U6 snRNA-associated Sm-like protein LSm5
3 Sobic.003G190800 GA18326-PA, putative, expressed -
4 Sobic.002G331300 60S ribosomal protein L38, putative, expressed K02923: RP-L38e, large subunit ribosomal protein L38e
5 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
6 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
7 Sobic.001G431700 expressed protein K18171: COX assembly mitochondrial protein 1
8 Sobic.003G367900 LSM domain containing protein, expressed K12622: U6 snRNA-associated Sm-like protein LSm3
9 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
10 Sobic.001G025600 huntingtin-interacting protein HYPK, putative, expressed -
11 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
12 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
13 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
14 Sobic.008G018000 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
15 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
16 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
17 Sobic.003G287300 50S ribosomal protein L20, putative, expressed K02887: RP-L20, MRPL20, large subunit ribosomal protein L20
18 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
19 Sobic.002G054000 ribosomal protein L4, putative, expressed K02930: RP-L4e, large subunit ribosomal protein L4e
20 Sobic.005G206700 WD domain, G-beta repeat domain containing protein, expressed K12602: WDR61, REC14, WD repeat-containing protein 61


Gene co-expression network
sample Sobic006G079900 Sobic006G079900 Sobic007G217400 Sobic007G217400 Sobic006G079900--Sobic007G217400 Sobic009G124400 Sobic009G124400 Sobic006G079900--Sobic009G124400 Sobic003G190800 Sobic003G190800 Sobic006G079900--Sobic003G190800 Sobic002G331300 Sobic002G331300 Sobic006G079900--Sobic002G331300 Sobic003G028100 Sobic003G028100 Sobic006G079900--Sobic003G028100 Sobic001G542900 Sobic001G542900 Sobic006G079900--Sobic001G542900 Sobic001G431700 Sobic001G431700 Sobic006G079900--Sobic001G431700 Sobic003G367900 Sobic003G367900 Sobic006G079900--Sobic003G367900 Sobic001G404100 Sobic001G404100 Sobic006G079900--Sobic001G404100 Sobic007G217400--Sobic001G542900 Sobic009G212300 Sobic009G212300 Sobic007G217400--Sobic009G212300 Sobic007G217400--Sobic006G079900 Sobic007G165300 Sobic007G165300 Sobic007G217400--Sobic007G165300 Sobic008G137600 Sobic008G137600 Sobic007G217400--Sobic008G137600 Sobic009G234400 Sobic009G234400 Sobic007G217400--Sobic009G234400 Sobic009G207200 Sobic009G207200 Sobic007G217400--Sobic009G207200 Sobic002G423800 Sobic002G423800 Sobic007G217400--Sobic002G423800 Sobic006G211800 Sobic006G211800 Sobic007G217400--Sobic006G211800 Sobic007G152400 Sobic007G152400 Sobic009G124400--Sobic007G152400 Sobic009G124400--Sobic006G079900 Sobic009G124400--Sobic007G217400 Sobic009G124400--Sobic002G331300 Sobic001G025600 Sobic001G025600 Sobic009G124400--Sobic001G025600 Sobic009G120100 Sobic009G120100 Sobic009G124400--Sobic009G120100 Sobic009G124400--Sobic003G190800 Sobic004G204800 Sobic004G204800 Sobic009G124400--Sobic004G204800 Sobic009G124400--Sobic001G542900 Sobic003G190800--Sobic006G079900 Sobic003G190800--Sobic009G124400 Sobic009G258600 Sobic009G258600 Sobic003G190800--Sobic009G258600 Sobic003G190800--Sobic003G367900 Sobic002G279000 Sobic002G279000 Sobic003G190800--Sobic002G279000 Sobic005G206700 Sobic005G206700 Sobic003G190800--Sobic005G206700 Sobic006G231700 Sobic006G231700 Sobic003G190800--Sobic006G231700 Sobic004G137900 Sobic004G137900 Sobic003G190800--Sobic004G137900 Sobic001G199300 Sobic001G199300 Sobic003G190800--Sobic001G199300 Sobic006G115000 Sobic006G115000 Sobic002G331300--Sobic006G115000 Sobic005G050500 Sobic005G050500 Sobic002G331300--Sobic005G050500 Sobic003G129800 Sobic003G129800 Sobic002G331300--Sobic003G129800 Sobic009G179100 Sobic009G179100 Sobic002G331300--Sobic009G179100 Sobic004G342400 Sobic004G342400 Sobic002G331300--Sobic004G342400 Sobic001G334300 Sobic001G334300 Sobic002G331300--Sobic001G334300 Sobic009G233400 Sobic009G233400 Sobic002G331300--Sobic009G233400 Sobic009G227400 Sobic009G227400 Sobic002G331300--Sobic009G227400 Sobic010G023900 Sobic010G023900 Sobic002G331300--Sobic010G023900 Sobic003G028100--Sobic009G212300 Sobic003G028100--Sobic009G234400 Sobic001G096100 Sobic001G096100 Sobic003G028100--Sobic001G096100 Sobic003G196800 Sobic003G196800 Sobic003G028100--Sobic003G196800 Sobic003G028100--Sobic006G079900 Sobic003G028100--Sobic007G217400 Sobic010G013900 Sobic010G013900 Sobic003G028100--Sobic010G013900 Sobic003G028100--Sobic002G331300 Sobic003G028100--Sobic001G404100 Sobic001G542900--Sobic007G217400 Sobic001G542900--Sobic002G423800 Sobic004G335000 Sobic004G335000 Sobic001G542900--Sobic004G335000 Sobic008G110500 Sobic008G110500 Sobic001G542900--Sobic008G110500 Sobic003G043400 Sobic003G043400 Sobic001G542900--Sobic003G043400 Sobic001G444300 Sobic001G444300 Sobic001G542900--Sobic001G444300 Sobic002G141700 Sobic002G141700 Sobic001G542900--Sobic002G141700 Sobic009G164700 Sobic009G164700 Sobic001G542900--Sobic009G164700 Sobic007G176200 Sobic007G176200 Sobic001G542900--Sobic007G176200 Sobic008G018000 Sobic008G018000 Sobic001G431700--Sobic008G018000 Sobic009G012700 Sobic009G012700 Sobic001G431700--Sobic009G012700 Sobic001G431700--Sobic006G079900 Sobic003G287300 Sobic003G287300 Sobic001G431700--Sobic003G287300 Sobic010G018000 Sobic010G018000 Sobic001G431700--Sobic010G018000 Sobic008G093200 Sobic008G093200 Sobic001G431700--Sobic008G093200 Sobic001G431700--Sobic010G013900 Sobic006G052400 Sobic006G052400 Sobic001G431700--Sobic006G052400 Sobic002G371200 Sobic002G371200 Sobic001G431700--Sobic002G371200 Sobic003G367900--Sobic001G404100 Sobic003G367900--Sobic006G052400 Sobic003G367900--Sobic001G096100 Sobic006G281200 Sobic006G281200 Sobic003G367900--Sobic006G281200 Sobic003G127700 Sobic003G127700 Sobic003G367900--Sobic003G127700 Sobic003G367900--Sobic002G331300 Sobic004G175700 Sobic004G175700 Sobic003G367900--Sobic004G175700 Sobic003G367900--Sobic009G258600 Sobic008G100000 Sobic008G100000 Sobic003G367900--Sobic008G100000 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200
Octagon: transcription factors


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