Gene annotation
Transcriptome id Sobic.004G012800.1
Synonym RPB15.9, RPB15.9.9, ATRPB15.9, NRPB4, Sb04g001250
Functional annotation DNA-directed RNA polymerase II subunit RPB4, putative, expressed
UniProt C5XSB8
Pfam PF03874
Panther DB PTHR21297
NCBI CDD KOG2351; RNA polymerase II, fourth largest subunit
KEGG Orthology K03012; RPB4, DNA-directed RNA polymerase II subunit RPB4
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT5G09920 : RNA polymerase II, Rpb4, core protein
RAP-DB (Rice) LOC_Os02g02510.1 : DNA-directed RNA polymerase II subunit RPB4, putative, expressed
MaizeGDB (Corn) Zm00025a035052
Brachypodium KQJ92911
Barley HORVU0Hr1G040320.3 , HORVU0Hr1G040320.2 , HORVU0Hr1G040320.1
Wheat TraesCS6B02G062600 , TraesCS6D02G053600 , TraesCS6A02G046500
Populus -


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cDNA sequences
Sobic.004G012800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
2 Sobic.006G231500 acetyltransferase, GNAT family, putative, expressed K00670: NAA30, N-alpha-acetyltransferase 30
3 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
4 Sobic.009G001900 expressed protein -
5 Sobic.002G254650 - -
6 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
7 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
8 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
9 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
10 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
11 Sobic.009G212300 eukaryotic translation initiation factor 3 subunit F, putative, expressed K03249: translation initiation factor 3 subunit F
12 Sobic.001G286300 - -
13 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
14 Sobic.003G028100 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
15 Sobic.002G090700 WD domain, G-beta repeat domain containing protein, expressed K14004: protein transport protein SEC13
16 Sobic.003G024500 expressed protein -
17 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
18 Sobic.003G227200 mitochondrial import receptor subunit TOM7-1, putative, expressed K17771: mitochondrial import receptor subunit TOM7
19 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
20 Sobic.001G216701 - -


Gene co-expression network
sample Sobic004G012800 Sobic004G012800 Sobic004G137900 Sobic004G137900 Sobic004G012800--Sobic004G137900 Sobic006G231500 Sobic006G231500 Sobic004G012800--Sobic006G231500 Sobic006G231700 Sobic006G231700 Sobic004G012800--Sobic006G231700 Sobic009G001900 Sobic009G001900 Sobic004G012800--Sobic009G001900 Sobic002G254650 Sobic002G254650 Sobic004G012800--Sobic002G254650 Sobic005G111100 Sobic005G111100 Sobic004G012800--Sobic005G111100 Sobic003G358300 Sobic003G358300 Sobic004G012800--Sobic003G358300 Sobic006G094600 Sobic006G094600 Sobic004G012800--Sobic006G094600 Sobic001G532100 Sobic001G532100 Sobic004G012800--Sobic001G532100 Sobic004G137900--Sobic004G012800 Sobic004G137900--Sobic006G231700 Sobic004G137900--Sobic003G358300 Sobic006G013900 Sobic006G013900 Sobic004G137900--Sobic006G013900 Sobic002G331300 Sobic002G331300 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic009G120100 Sobic009G120100 Sobic004G137900--Sobic009G120100 Sobic003G129800 Sobic003G129800 Sobic004G137900--Sobic003G129800 Sobic004G137900--Sobic005G111100 Sobic003G305100 Sobic003G305100 Sobic006G231500--Sobic003G305100 Sobic009G212300 Sobic009G212300 Sobic006G231500--Sobic009G212300 Sobic006G231500--Sobic009G001900 Sobic004G202100 Sobic004G202100 Sobic006G231500--Sobic004G202100 Sobic006G231500--Sobic004G012800 Sobic006G109700 Sobic006G109700 Sobic006G231500--Sobic006G109700 Sobic007G091000 Sobic007G091000 Sobic006G231500--Sobic007G091000 Sobic002G296200 Sobic002G296200 Sobic006G231500--Sobic002G296200 Sobic006G231500--Sobic001G286300 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic006G231700--Sobic004G137900 Sobic009G001900--Sobic002G296200 Sobic008G136800 Sobic008G136800 Sobic009G001900--Sobic008G136800 Sobic004G066800 Sobic004G066800 Sobic009G001900--Sobic004G066800 Sobic006G203900 Sobic006G203900 Sobic009G001900--Sobic006G203900 Sobic003G322300 Sobic003G322300 Sobic009G001900--Sobic003G322300 Sobic004G164000 Sobic004G164000 Sobic009G001900--Sobic004G164000 Sobic009G001900--Sobic006G231500 Sobic004G260200 Sobic004G260200 Sobic009G001900--Sobic004G260200 Sobic002G309700 Sobic002G309700 Sobic009G001900--Sobic002G309700 Sobic004G352900 Sobic004G352900 Sobic002G254650--Sobic004G352900 Sobic008G132800 Sobic008G132800 Sobic002G254650--Sobic008G132800 Sobic010G065400 Sobic010G065400 Sobic002G254650--Sobic010G065400 Sobic002G254650--Sobic004G012800 Sobic010G054200 Sobic010G054200 Sobic002G254650--Sobic010G054200 Sobic010G029400 Sobic010G029400 Sobic002G254650--Sobic010G029400 Sobic005G157200 Sobic005G157200 Sobic002G254650--Sobic005G157200 Sobic010G099200 Sobic010G099200 Sobic002G254650--Sobic010G099200 Sobic006G052400 Sobic006G052400 Sobic002G254650--Sobic006G052400 Sobic005G111100--Sobic001G128400 Sobic005G111100--Sobic003G129800 Sobic004G032000 Sobic004G032000 Sobic005G111100--Sobic004G032000 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic005G111100--Sobic010G054200 Sobic005G111100--Sobic006G231700 Sobic002G218000 Sobic002G218000 Sobic005G111100--Sobic002G218000 Sobic001G066700 Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic003G358300--Sobic006G231700 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic002G386300 Sobic002G386300 Sobic003G358300--Sobic002G386300 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic001G126200 Sobic001G126200 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic001G285300 Sobic001G285300 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G532100--Sobic001G285300 Sobic001G532100--Sobic001G294900 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400
Octagon: transcription factors


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