Gene annotation
Transcriptome id Sobic.003G358300.1
Synonym Sb03g040040
Functional annotation josephin, putative, expressed
UniProt C5XPV0
Pfam PF02099
Panther DB PTHR14159
NCBI CDD KOG2935; Ataxin 3/Josephin
KEGG Orthology K11863; ATXN3, Ataxin-3
Gene Ontology GO:0008242; omega peptidase activity


Orthologs (automatic annotation)
TAIR AT3G54130 : Josephin family protein
RAP-DB (Rice) LOC_Os01g63250.1 : josephin, putative, expressed
MaizeGDB (Corn) Zm00025a051124 , Zm00025a026835 , Zm00025a039634
Brachypodium KQK10600
Barley HORVU3Hr1G085430.2 , HORVU3Hr1G085430.1
Wheat TraesCS3D02G359000 , TraesCS3A02G365900 , TraesCS3B02G397700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G358300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
2 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
3 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
4 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
5 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
6 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
7 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
8 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
9 Sobic.009G191200 40S ribosomal protein S15, putative, expressed K02958: RP-S15e, small subunit ribosomal protein S15e
10 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
11 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
12 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
13 Sobic.010G106200 signal recognition particle 9 kDa protein, putative, expressed K03109: signal recognition particle subunit SRP9
14 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5
15 Sobic.001G285300 expressed protein -
16 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
17 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
18 Sobic.003G233500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
19 Sobic.009G191600 tesmin/TSO1-like CXC domain containing protein, expressed -
20 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic003G358300 Sobic003G358300 Sobic001G066700 Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic006G231700 Sobic006G231700 Sobic003G358300--Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic004G032000 Sobic004G032000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic002G386300 Sobic002G386300 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic002G218000 Sobic002G218000 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic010G266300 Sobic010G266300 Sobic001G066700--Sobic010G266300 Sobic003G233500 Sobic003G233500 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic009G070200 Sobic009G070200 Sobic001G066700--Sobic009G070200 Sobic006G231700--Sobic005G111100 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic005G111100--Sobic001G128400 Sobic005G111100--Sobic003G129800 Sobic005G111100--Sobic004G032000 Sobic004G066800 Sobic004G066800 Sobic005G111100--Sobic004G066800 Sobic003G280700 Sobic003G280700 Sobic005G111100--Sobic003G280700 Sobic007G152400 Sobic007G152400 Sobic005G111100--Sobic007G152400 Sobic010G054200 Sobic010G054200 Sobic005G111100--Sobic010G054200 Sobic005G111100--Sobic006G231700 Sobic005G111100--Sobic002G218000 Sobic009G201800 Sobic009G201800 Sobic002G044000--Sobic009G201800 Sobic002G044000--Sobic003G358300 Sobic002G044000--Sobic009G070200 Sobic001G285300 Sobic001G285300 Sobic002G044000--Sobic001G285300 Sobic006G143500 Sobic006G143500 Sobic002G044000--Sobic006G143500 Sobic002G044000--Sobic004G032000 Sobic001G126200 Sobic001G126200 Sobic002G044000--Sobic001G126200 Sobic002G044000--Sobic007G152400 Sobic002G044000--Sobic002G386300 Sobic004G032000--Sobic001G517600 Sobic004G032000--Sobic003G129800 Sobic004G032000--Sobic005G111100 Sobic004G032000--Sobic001G128400 Sobic009G223300 Sobic009G223300 Sobic004G032000--Sobic009G223300 Sobic004G032000--Sobic009G191200 Sobic008G135000 Sobic008G135000 Sobic004G032000--Sobic008G135000 Sobic003G109600 Sobic003G109600 Sobic004G032000--Sobic003G109600 Sobic005G050500 Sobic005G050500 Sobic004G032000--Sobic005G050500 Sobic004G166500--Sobic003G358300 Sobic001G201100 Sobic001G201100 Sobic004G166500--Sobic001G201100 Sobic004G166500--Sobic001G066700 Sobic003G368700 Sobic003G368700 Sobic004G166500--Sobic003G368700 Sobic008G130400 Sobic008G130400 Sobic004G166500--Sobic008G130400 Sobic004G166500--Sobic002G218000 Sobic006G239300 Sobic006G239300 Sobic004G166500--Sobic006G239300 Sobic001G505500 Sobic001G505500 Sobic004G166500--Sobic001G505500 Sobic004G166500--Sobic009G070200 Sobic002G386300--Sobic001G517600 Sobic002G386300--Sobic003G358300 Sobic002G386300--Sobic006G231700 Sobic010G100000 Sobic010G100000 Sobic002G386300--Sobic010G100000 Sobic002G386300--Sobic002G044000 Sobic002G386300--Sobic009G191200 Sobic002G386300--Sobic003G280700 Sobic006G226500 Sobic006G226500 Sobic002G386300--Sobic006G226500 Sobic004G343600 Sobic004G343600 Sobic002G386300--Sobic004G343600 Sobic007G163700--Sobic006G231700 Sobic007G163700--Sobic001G517600 Sobic005G157200 Sobic005G157200 Sobic007G163700--Sobic005G157200 Sobic010G267900 Sobic010G267900 Sobic007G163700--Sobic010G267900 Sobic001G529000 Sobic001G529000 Sobic007G163700--Sobic001G529000 Sobic007G163700--Sobic001G128400 Sobic003G362400 Sobic003G362400 Sobic007G163700--Sobic003G362400 Sobic002G373800 Sobic002G373800 Sobic007G163700--Sobic002G373800 Sobic003G018600 Sobic003G018600 Sobic007G163700--Sobic003G018600 Sobic009G233400 Sobic009G233400 Sobic009G191200--Sobic009G233400 Sobic009G191200--Sobic008G135000 Sobic001G334300 Sobic001G334300 Sobic009G191200--Sobic001G334300 Sobic001G058900 Sobic001G058900 Sobic009G191200--Sobic001G058900 Sobic002G115000 Sobic002G115000 Sobic009G191200--Sobic002G115000 Sobic002G049300 Sobic002G049300 Sobic009G191200--Sobic002G049300 Sobic009G191200--Sobic003G280700 Sobic001G085400 Sobic001G085400 Sobic009G191200--Sobic001G085400 Sobic002G304900 Sobic002G304900 Sobic009G191200--Sobic002G304900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.