Gene annotation
Transcriptome id Sobic.010G106200.1
Synonym Sb10g009280
Functional annotation signal recognition particle 9 kDa protein, putative, expressed
UniProt C5Z809
Pfam PF05486
Panther DB PTHR12834 PTHR12834:SF12
NCBI CDD KOG3465; Signal recognition particle, subunit Srp9
KEGG Orthology K03109; signal recognition particle subunit SRP9
Gene Ontology GO:0008312; 7S RNA binding GO:0006614SRP-dependent cotranslational protein targeting to membrane


Orthologs (automatic annotation)
TAIR AT3G49100 : Signal recognition particle, SRP9/SRP14 subunit
RAP-DB (Rice) LOC_Os06g14550.1 : signal recognition particle 9 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a042798 , Zm00025a050379
Brachypodium KQK18692
Barley HORVU0Hr1G020070.2 , HORVU7Hr1G041660.3 , HORVU7Hr1G041660.1
Wheat TraesCS7B02G111800 , TraesCS7D02G207700 , TraesCS7A02G204600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G084900 expressed protein -
2 Sobic.001G175300 ribosomal protein L24, putative, expressed K02896: RP-L24e, large subunit ribosomal protein L24e
3 Sobic.001G403500 40S ribosomal protein S7, putative, expressed K02993: RP-S7e, small subunit ribosomal protein S7e
4 Sobic.002G049300 ribosomal protein S13p/S18e, putative, expressed K02964: RP-S18e, small subunit ribosomal protein S18e
5 Sobic.007G190800 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17780: mitochondrial import inner membrane translocase subunit TIM8
6 Sobic.010G204500 peptidase, T1 family, putative, expressed K02735: 20S proteasome subunit beta 3
7 Sobic.009G022400 ribosomal protein L13, putative, expressed K02872: RP-L13Ae, large subunit ribosomal protein L13Ae
8 Sobic.001G377800 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
9 Sobic.002G286900 ribosomal protein L14, putative, expressed K02875: RP-L14e, large subunit ribosomal protein L14e
10 Sobic.009G180000 OsCam1-3 - Calmodulin, expressed K02183: calmodulin
11 Sobic.001G016400 ribosomal protein L22, putative, expressed K02880: RP-L17e, large subunit ribosomal protein L17e
12 Sobic.006G137100 60S ribosomal protein L23A, putative, expressed K02893: RP-L23Ae, large subunit ribosomal protein L23Ae
13 Sobic.007G178600 - K02966: RP-S19e, small subunit ribosomal protein S19e
14 Sobic.001G128400 peptidase, T1 family, putative, expressed K02734: 20S proteasome subunit beta 4
15 Sobic.003G280700 40S ribosomal protein S24, putative, expressed K02974: RP-S24e, small subunit ribosomal protein S24e
16 Sobic.009G050300 60S ribosomal protein L18-3, putative, expressed K02883: RP-L18e, large subunit ribosomal protein L18e
17 Sobic.004G008400 ribosomal protein L37, putative, expressed K02922: RP-L37e, large subunit ribosomal protein L37e
18 Sobic.007G138700 60S ribosomal protein L34, putative, expressed K02915: RP-L34e, large subunit ribosomal protein L34e
19 Sobic.010G230700 60S ribosomal protein L27-3, putative, expressed K02901: RP-L27e, large subunit ribosomal protein L27e
20 Sobic.005G110800 - -


Gene co-expression network
sample Sobic010G106200 Sobic010G106200 Sobic001G084900 Sobic001G084900 Sobic010G106200--Sobic001G084900 Sobic001G175300 Sobic001G175300 Sobic010G106200--Sobic001G175300 Sobic001G403500 Sobic001G403500 Sobic010G106200--Sobic001G403500 Sobic002G049300 Sobic002G049300 Sobic010G106200--Sobic002G049300 Sobic007G190800 Sobic007G190800 Sobic010G106200--Sobic007G190800 Sobic010G204500 Sobic010G204500 Sobic010G106200--Sobic010G204500 Sobic009G022400 Sobic009G022400 Sobic010G106200--Sobic009G022400 Sobic001G377800 Sobic001G377800 Sobic010G106200--Sobic001G377800 Sobic002G286900 Sobic002G286900 Sobic010G106200--Sobic002G286900 Sobic001G084900--Sobic010G106200 Sobic006G147000 Sobic006G147000 Sobic001G084900--Sobic006G147000 Sobic009G180000 Sobic009G180000 Sobic001G084900--Sobic009G180000 Sobic010G153100 Sobic010G153100 Sobic001G084900--Sobic010G153100 Sobic002G190900 Sobic002G190900 Sobic001G084900--Sobic002G190900 Sobic003G155400 Sobic003G155400 Sobic001G084900--Sobic003G155400 Sobic003G072300 Sobic003G072300 Sobic001G084900--Sobic003G072300 Sobic002G081600 Sobic002G081600 Sobic001G084900--Sobic002G081600 Sobic002G187500 Sobic002G187500 Sobic001G084900--Sobic002G187500 Sobic010G206200 Sobic010G206200 Sobic001G175300--Sobic010G206200 Sobic001G175300--Sobic001G403500 Sobic004G198400 Sobic004G198400 Sobic001G175300--Sobic004G198400 Sobic009G050300 Sobic009G050300 Sobic001G175300--Sobic009G050300 Sobic003G078200 Sobic003G078200 Sobic001G175300--Sobic003G078200 Sobic009G054800 Sobic009G054800 Sobic001G175300--Sobic009G054800 Sobic001G175300--Sobic002G286900 Sobic009G242300 Sobic009G242300 Sobic001G175300--Sobic009G242300 Sobic002G372400 Sobic002G372400 Sobic001G175300--Sobic002G372400 Sobic001G403500--Sobic009G050300 Sobic001G403500--Sobic004G198400 Sobic009G215200 Sobic009G215200 Sobic001G403500--Sobic009G215200 Sobic002G379500 Sobic002G379500 Sobic001G403500--Sobic002G379500 Sobic007G197800 Sobic007G197800 Sobic001G403500--Sobic007G197800 Sobic001G403500--Sobic002G081600 Sobic006G137100 Sobic006G137100 Sobic001G403500--Sobic006G137100 Sobic006G116700 Sobic006G116700 Sobic001G403500--Sobic006G116700 Sobic001G403500--Sobic010G206200 Sobic001G085400 Sobic001G085400 Sobic002G049300--Sobic001G085400 Sobic007G178600 Sobic007G178600 Sobic002G049300--Sobic007G178600 Sobic002G047600 Sobic002G047600 Sobic002G049300--Sobic002G047600 Sobic002G049300--Sobic009G022400 Sobic008G108601 Sobic008G108601 Sobic002G049300--Sobic008G108601 Sobic003G249700 Sobic003G249700 Sobic002G049300--Sobic003G249700 Sobic001G436200 Sobic001G436200 Sobic002G049300--Sobic001G436200 Sobic002G049300--Sobic006G137100 Sobic002G049300--Sobic002G286900 Sobic010G230700 Sobic010G230700 Sobic007G190800--Sobic010G230700 Sobic005G019700 Sobic005G019700 Sobic007G190800--Sobic005G019700 Sobic004G104100 Sobic004G104100 Sobic007G190800--Sobic004G104100 Sobic007G190800--Sobic009G050300 Sobic004G104300 Sobic004G104300 Sobic007G190800--Sobic004G104300 Sobic007G019000 Sobic007G019000 Sobic007G190800--Sobic007G019000 Sobic007G018300 Sobic007G018300 Sobic007G190800--Sobic007G018300 Sobic007G212600 Sobic007G212600 Sobic007G190800--Sobic007G212600 Sobic007G190800--Sobic001G403500 Sobic010G204500--Sobic001G403500 Sobic001G483100 Sobic001G483100 Sobic010G204500--Sobic001G483100 Sobic001G016400 Sobic001G016400 Sobic010G204500--Sobic001G016400 Sobic010G204500--Sobic009G050300 Sobic010G204500--Sobic009G180000 Sobic002G056200 Sobic002G056200 Sobic010G204500--Sobic002G056200 Sobic010G204500--Sobic002G081600 Sobic010G204500--Sobic009G215200 Sobic001G018900 Sobic001G018900 Sobic010G204500--Sobic001G018900 Sobic009G022400--Sobic002G049300 Sobic009G022400--Sobic007G178600 Sobic009G022400--Sobic001G085400 Sobic009G022400--Sobic001G175300 Sobic006G221200 Sobic006G221200 Sobic009G022400--Sobic006G221200 Sobic009G163800 Sobic009G163800 Sobic009G022400--Sobic009G163800 Sobic003G280700 Sobic003G280700 Sobic009G022400--Sobic003G280700 Sobic009G022400--Sobic008G108601 Sobic009G022400--Sobic004G104100 Sobic002G406500 Sobic002G406500 Sobic001G377800--Sobic002G406500 Sobic001G377800--Sobic004G104100 Sobic001G377800--Sobic001G085400 Sobic001G091801 Sobic001G091801 Sobic001G377800--Sobic001G091801 Sobic001G377800--Sobic007G019000 Sobic001G377800--Sobic006G221200 Sobic006G081100 Sobic006G081100 Sobic001G377800--Sobic006G081100 Sobic001G377800--Sobic002G049300 Sobic001G377800--Sobic009G050300 Sobic002G286900--Sobic006G137100 Sobic002G286900--Sobic008G108601 Sobic004G008400 Sobic004G008400 Sobic002G286900--Sobic004G008400 Sobic002G286900--Sobic009G050300 Sobic001G226500 Sobic001G226500 Sobic002G286900--Sobic001G226500 Sobic002G286900--Sobic001G403500 Sobic002G286900--Sobic003G249700 Sobic005G110800 Sobic005G110800 Sobic002G286900--Sobic005G110800 Sobic002G286900--Sobic007G178600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.