Gene annotation
Transcriptome id Sobic.009G070200.1
Synonym Sb09g005900, DER1
Functional annotation Der1-like family domain containing protein, expressed
UniProt C5YUA9
Pfam PF04511
Panther DB PTHR11009 PTHR11009:SF13
NCBI CDD KOG0858; Predicted membrane protein
KEGG Orthology K13989; Derlin-2/3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G29330 : DERLIN-1
RAP-DB (Rice) LOC_Os05g09550.1 : Der1-like family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a043085 , Zm00025a037525
Brachypodium PNT71660
Barley HORVU1Hr1G028280.6 , HORVU1Hr1G028280.5 , HORVU1Hr1G028280.4 , HORVU1Hr1G028280.3 , HORVU1Hr1G028280.2 , HORVU1Hr1G028280.1
Wheat TraesCS1D02G123900 , TraesCS1D02G123900 , TraesCS1A02G123000 , TraesCS1B02G142200 , TraesCS1B02G142200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G266300 translocon-associated protein subunit alpha precursor, putative, expressed K13249: translocon-associated protein subunit alpha
2 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
3 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
4 Sobic.008G134900 translocon-associated protein beta domain containing protein, expressed K13250: translocon-associated protein subunit beta
5 Sobic.002G261900 arabinogalactan protein, putative, expressed -
6 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
7 Sobic.009G120100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
8 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
9 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
10 Sobic.003G233500 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
11 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
12 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
13 Sobic.004G204800 26S proteasome non-ATPase regulatory subunit 6, putative, expressed K03037: PSMD6, 26S proteasome regulatory subunit N7
14 Sobic.009G232800 zinc finger, C3HC4 type domain containing protein, expressed K19041: E3 ubiquitin-protein ligase RNF38/44
15 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
16 Sobic.004G063500 protein transport protein SEC61 subunit gamma, putative, expressed K07342: SEC61G, SSS1, protein transport protein SEC61 subunit gamma and related proteins
17 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -
18 Sobic.010G225300 ubiquitin family protein, putative, expressed K08770: ubiquitin C
19 Sobic.004G166500 N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed K12251: N-carbamoylputrescine amidase
20 Sobic.006G013000 succinate dehydrogenase subunit 3, putative, expressed K00236: SDHC, succinate dehydrogenase (ubiquinone) cytochrome b560 subunit


Gene co-expression network
sample Sobic009G070200 Sobic009G070200 Sobic010G266300 Sobic010G266300 Sobic009G070200--Sobic010G266300 Sobic001G066700 Sobic001G066700 Sobic009G070200--Sobic001G066700 Sobic002G044000 Sobic002G044000 Sobic009G070200--Sobic002G044000 Sobic008G134900 Sobic008G134900 Sobic009G070200--Sobic008G134900 Sobic002G261900 Sobic002G261900 Sobic009G070200--Sobic002G261900 Sobic003G358300 Sobic003G358300 Sobic009G070200--Sobic003G358300 Sobic009G120100 Sobic009G120100 Sobic009G070200--Sobic009G120100 Sobic003G043400 Sobic003G043400 Sobic009G070200--Sobic003G043400 Sobic007G152400 Sobic007G152400 Sobic009G070200--Sobic007G152400 Sobic010G266300--Sobic008G134900 Sobic010G266300--Sobic009G070200 Sobic010G266300--Sobic001G066700 Sobic003G233500 Sobic003G233500 Sobic010G266300--Sobic003G233500 Sobic010G008800 Sobic010G008800 Sobic010G266300--Sobic010G008800 Sobic010G266300--Sobic007G152400 Sobic005G111100 Sobic005G111100 Sobic010G266300--Sobic005G111100 Sobic001G224400 Sobic001G224400 Sobic010G266300--Sobic001G224400 Sobic004G204800 Sobic004G204800 Sobic010G266300--Sobic004G204800 Sobic001G066700--Sobic003G358300 Sobic003G403400 Sobic003G403400 Sobic001G066700--Sobic003G403400 Sobic002G218000 Sobic002G218000 Sobic001G066700--Sobic002G218000 Sobic001G066700--Sobic005G111100 Sobic009G191600 Sobic009G191600 Sobic001G066700--Sobic009G191600 Sobic001G066700--Sobic010G266300 Sobic001G066700--Sobic003G233500 Sobic010G225300 Sobic010G225300 Sobic001G066700--Sobic010G225300 Sobic001G066700--Sobic009G070200 Sobic009G201800 Sobic009G201800 Sobic002G044000--Sobic009G201800 Sobic002G044000--Sobic003G358300 Sobic002G044000--Sobic009G070200 Sobic001G285300 Sobic001G285300 Sobic002G044000--Sobic001G285300 Sobic006G143500 Sobic006G143500 Sobic002G044000--Sobic006G143500 Sobic004G032000 Sobic004G032000 Sobic002G044000--Sobic004G032000 Sobic001G126200 Sobic001G126200 Sobic002G044000--Sobic001G126200 Sobic002G044000--Sobic007G152400 Sobic002G386300 Sobic002G386300 Sobic002G044000--Sobic002G386300 Sobic008G134900--Sobic010G266300 Sobic008G134900--Sobic009G070200 Sobic008G134900--Sobic001G066700 Sobic008G134900--Sobic007G152400 Sobic001G458200 Sobic001G458200 Sobic008G134900--Sobic001G458200 Sobic008G134900--Sobic004G204800 Sobic009G122100 Sobic009G122100 Sobic008G134900--Sobic009G122100 Sobic009G077400 Sobic009G077400 Sobic008G134900--Sobic009G077400 Sobic003G382900 Sobic003G382900 Sobic008G134900--Sobic003G382900 Sobic006G062800 Sobic006G062800 Sobic002G261900--Sobic006G062800 Sobic007G059900 Sobic007G059900 Sobic002G261900--Sobic007G059900 Sobic002G083266 Sobic002G083266 Sobic002G261900--Sobic002G083266 Sobic001G311100 Sobic001G311100 Sobic002G261900--Sobic001G311100 Sobic002G261900--Sobic001G066700 Sobic002G261900--Sobic003G043400 Sobic010G204300 Sobic010G204300 Sobic002G261900--Sobic010G204300 Sobic002G261900--Sobic009G070200 Sobic004G026200 Sobic004G026200 Sobic002G261900--Sobic004G026200 Sobic003G358300--Sobic001G066700 Sobic006G231700 Sobic006G231700 Sobic003G358300--Sobic006G231700 Sobic003G358300--Sobic005G111100 Sobic003G358300--Sobic002G044000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic004G063500 Sobic004G063500 Sobic009G120100--Sobic004G063500 Sobic009G120100--Sobic007G152400 Sobic001G286300 Sobic001G286300 Sobic009G120100--Sobic001G286300 Sobic006G095200 Sobic006G095200 Sobic009G120100--Sobic006G095200 Sobic002G331300 Sobic002G331300 Sobic009G120100--Sobic002G331300 Sobic009G120100--Sobic009G070200 Sobic009G120100--Sobic003G233500 Sobic009G120100--Sobic005G111100 Sobic007G029400 Sobic007G029400 Sobic009G120100--Sobic007G029400 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic007G152400--Sobic008G137600 Sobic007G152400--Sobic004G204800 Sobic007G152400--Sobic002G331300
Octagon: transcription factors


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