Gene annotation
Transcriptome id Sobic.009G232800.1
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PA17
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF16
NCBI CDD -
KEGG Orthology K19041; E3 ubiquitin-protein ligase RNF38/44
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT5G42940 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g48970.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a036612 , Zm00025a044574
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G232800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G389900 aquaporin SIP2-1, putative, expressed K09875: aquaporin SIP
2 Sobic.003G403400 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.002G251900 chaperone protein dnaJ 10, putative, expressed -
4 Sobic.006G062800 OTU-like cysteine protease family protein, putative, expressed -
5 Sobic.002G046100 zinc finger A20 and AN1 domain-containing stress-associated protein, putative, expressed -
6 Sobic.003G285800 ubiquitin domain-containing protein 1, putative, expressed -
7 Sobic.004G024200 similar to Bax inhibitor 1(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@transmembrane BAX inhibitor motif-containing protein, putative, expressed -
8 Sobic.001G447100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@ATP8, putative, expressed -
9 Sobic.003G249800 60S ribosomal protein L18a-1, putative, expressed -
10 Sobic.001G477300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GRAM domain containing protein, expressed -
11 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
12 Sobic.004G306300 expressed protein -
13 Sobic.003G024500 expressed protein -
14 Sobic.002G218000 expressed protein K13528: mediator of RNA polymerase II transcription subunit 20
15 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
16 Sobic.009G129000 E3 ubiquitin-protein ligase MGRN1, putative, expressed -
17 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
18 Sobic.004G177700 AIG1, putative, expressed -
19 Sobic.003G063200 uncharacterized Cys-rich domain containing protein, putative, expressed -
20 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5


Gene co-expression network
sample Sobic009G232800 Sobic009G232800 Sobic001G389900 Sobic001G389900 Sobic009G232800--Sobic001G389900 Sobic003G403400 Sobic003G403400 Sobic009G232800--Sobic003G403400 Sobic002G251900 Sobic002G251900 Sobic009G232800--Sobic002G251900 Sobic006G062800 Sobic006G062800 Sobic009G232800--Sobic006G062800 Sobic002G046100 Sobic002G046100 Sobic009G232800--Sobic002G046100 Sobic003G285800 Sobic003G285800 Sobic009G232800--Sobic003G285800 Sobic004G024200 Sobic004G024200 Sobic009G232800--Sobic004G024200 Sobic001G447100 Sobic001G447100 Sobic009G232800--Sobic001G447100 Sobic003G249800 Sobic003G249800 Sobic009G232800--Sobic003G249800 Sobic001G389900--Sobic003G403400 Sobic001G389900--Sobic009G232800 Sobic001G477300 Sobic001G477300 Sobic001G389900--Sobic001G477300 Sobic001G389900--Sobic002G046100 Sobic004G177700 Sobic004G177700 Sobic001G389900--Sobic004G177700 Sobic009G063900 Sobic009G063900 Sobic001G389900--Sobic009G063900 Sobic001G066700 Sobic001G066700 Sobic001G389900--Sobic001G066700 Sobic001G389900--Sobic001G447100 Sobic003G072300 Sobic003G072300 Sobic001G389900--Sobic003G072300 Sobic003G403400--Sobic001G389900 Sobic003G403400--Sobic001G066700 Sobic003G063200 Sobic003G063200 Sobic003G403400--Sobic003G063200 Sobic002G218000 Sobic002G218000 Sobic003G403400--Sobic002G218000 Sobic005G111100 Sobic005G111100 Sobic003G403400--Sobic005G111100 Sobic003G350300 Sobic003G350300 Sobic003G403400--Sobic003G350300 Sobic010G225300 Sobic010G225300 Sobic003G403400--Sobic010G225300 Sobic003G403400--Sobic009G232800 Sobic004G265700 Sobic004G265700 Sobic003G403400--Sobic004G265700 Sobic002G393400 Sobic002G393400 Sobic002G251900--Sobic002G393400 Sobic003G393900 Sobic003G393900 Sobic002G251900--Sobic003G393900 Sobic009G181800 Sobic009G181800 Sobic002G251900--Sobic009G181800 Sobic002G387900 Sobic002G387900 Sobic002G251900--Sobic002G387900 Sobic005G011300 Sobic005G011300 Sobic002G251900--Sobic005G011300 Sobic001G459800 Sobic001G459800 Sobic002G251900--Sobic001G459800 Sobic004G306300 Sobic004G306300 Sobic002G251900--Sobic004G306300 Sobic010G204500 Sobic010G204500 Sobic002G251900--Sobic010G204500 Sobic004G171400 Sobic004G171400 Sobic002G251900--Sobic004G171400 Sobic010G213400 Sobic010G213400 Sobic006G062800--Sobic010G213400 Sobic006G062800--Sobic003G249800 Sobic006G062800--Sobic003G285800 Sobic007G059900 Sobic007G059900 Sobic006G062800--Sobic007G059900 Sobic009G129000 Sobic009G129000 Sobic006G062800--Sobic009G129000 Sobic006G062800--Sobic002G218000 Sobic002G202300 Sobic002G202300 Sobic006G062800--Sobic002G202300 Sobic009G033700 Sobic009G033700 Sobic006G062800--Sobic009G033700 Sobic002G261900 Sobic002G261900 Sobic006G062800--Sobic002G261900 Sobic002G046100--Sobic003G285800 Sobic001G281400 Sobic001G281400 Sobic002G046100--Sobic001G281400 Sobic002G345300 Sobic002G345300 Sobic002G046100--Sobic002G345300 Sobic002G187500 Sobic002G187500 Sobic002G046100--Sobic002G187500 Sobic010G086200 Sobic010G086200 Sobic002G046100--Sobic010G086200 Sobic004G061200 Sobic004G061200 Sobic002G046100--Sobic004G061200 Sobic002G046100--Sobic001G477300 Sobic002G267500 Sobic002G267500 Sobic002G046100--Sobic002G267500 Sobic002G190900 Sobic002G190900 Sobic002G046100--Sobic002G190900 Sobic003G285800--Sobic002G046100 Sobic003G285800--Sobic002G187500 Sobic010G178200 Sobic010G178200 Sobic003G285800--Sobic010G178200 Sobic003G285800--Sobic003G350300 Sobic003G285800--Sobic002G345300 Sobic003G285800--Sobic001G477300 Sobic003G285800--Sobic001G281400 Sobic003G285800--Sobic010G086200 Sobic003G285800--Sobic009G129000 Sobic004G024200--Sobic001G447100 Sobic003G349700 Sobic003G349700 Sobic004G024200--Sobic003G349700 Sobic007G176600 Sobic007G176600 Sobic004G024200--Sobic007G176600 Sobic004G086400 Sobic004G086400 Sobic004G024200--Sobic004G086400 Sobic006G207100 Sobic006G207100 Sobic004G024200--Sobic006G207100 Sobic009G131400 Sobic009G131400 Sobic004G024200--Sobic009G131400 Sobic004G146000 Sobic004G146000 Sobic004G024200--Sobic004G146000 Sobic003G041200 Sobic003G041200 Sobic004G024200--Sobic003G041200 Sobic001G108200 Sobic001G108200 Sobic004G024200--Sobic001G108200 Sobic001G447100--Sobic003G349700 Sobic001G447100--Sobic004G024200 Sobic001G447100--Sobic007G176600 Sobic008G111500 Sobic008G111500 Sobic001G447100--Sobic008G111500 Sobic007G074200 Sobic007G074200 Sobic001G447100--Sobic007G074200 Sobic001G100600 Sobic001G100600 Sobic001G447100--Sobic001G100600 Sobic001G447100--Sobic001G477300 Sobic001G447100--Sobic009G131400 Sobic001G447100--Sobic003G041200 Sobic008G161000 Sobic008G161000 Sobic003G249800--Sobic008G161000 Sobic001G037000 Sobic001G037000 Sobic003G249800--Sobic001G037000 Sobic003G249800--Sobic009G033700 Sobic003G249800--Sobic002G046100 Sobic002G282400 Sobic002G282400 Sobic003G249800--Sobic002G282400 Sobic002G330000 Sobic002G330000 Sobic003G249800--Sobic002G330000 Sobic009G143400 Sobic009G143400 Sobic003G249800--Sobic009G143400 Sobic002G211900 Sobic002G211900 Sobic003G249800--Sobic002G211900 Sobic003G181500 Sobic003G181500 Sobic003G249800--Sobic003G181500
Octagon: transcription factors


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