Gene annotation
Transcriptome id Sobic.002G051200.1
Synonym Sb02g004290
Functional annotation PHF5-like protein domain containing protein, expressed
UniProt C5XAZ5
Pfam PF03660
Panther DB PTHR13120
NCBI CDD KOG1705; Uncharacterized conserved protein, contains CXXC motifs
KEGG Orthology K12834; PHD finger-like domain-containing protein 5A
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07170 : PHF5-like protein
RAP-DB (Rice) LOC_Os04g56760.1 : PHF5-like protein domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009419 , Zm00025a045154
Brachypodium KQK17722
Barley HORVU2Hr1G109760.1
Wheat -
Populus -


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cDNA sequences
Sobic.002G051200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
2 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
3 Sobic.010G256200 expressed protein -
4 Sobic.001G154400 expp1 protein precursor, putative, expressed -
5 Sobic.001G349400 heat shock protein DnaJ, putative, expressed -
6 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
7 Sobic.003G434000 expressed protein K06170: PSENEN, presenilin enhancer 2
8 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
9 Sobic.009G052500 RNA polymerase Rpb7, N-terminal domain containing protein, expressed K16253: NRPD7, DNA-directed RNA polymerase IV and V subunit 7
10 Sobic.001G285300 expressed protein -
11 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
12 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
13 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
14 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
15 Sobic.001G233800 expressed protein -
16 Sobic.001G107300 WD repeat-containing protein 5, putative, expressed K14963: WDR5, SWD3, COMPASS component SWD3
17 Sobic.005G206700 WD domain, G-beta repeat domain containing protein, expressed K12602: WDR61, REC14, WD repeat-containing protein 61
18 Sobic.006G143500 expressed protein -
19 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
20 Sobic.001G127400 yippee zinc-binding protein, putative, expressed -


Gene co-expression network
sample Sobic002G051200 Sobic002G051200 Sobic006G013900 Sobic006G013900 Sobic002G051200--Sobic006G013900 Sobic006G231700 Sobic006G231700 Sobic002G051200--Sobic006G231700 Sobic010G256200 Sobic010G256200 Sobic002G051200--Sobic010G256200 Sobic001G154400 Sobic001G154400 Sobic002G051200--Sobic001G154400 Sobic001G349400 Sobic001G349400 Sobic002G051200--Sobic001G349400 Sobic003G358300 Sobic003G358300 Sobic002G051200--Sobic003G358300 Sobic003G434000 Sobic003G434000 Sobic002G051200--Sobic003G434000 Sobic004G137900 Sobic004G137900 Sobic002G051200--Sobic004G137900 Sobic009G052500 Sobic009G052500 Sobic002G051200--Sobic009G052500 Sobic006G013900--Sobic006G231700 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic006G013900--Sobic004G137900 Sobic006G013900--Sobic001G154400 Sobic004G343600 Sobic004G343600 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic002G386300 Sobic002G386300 Sobic006G013900--Sobic002G386300 Sobic005G111100 Sobic005G111100 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic001G094500 Sobic001G094500 Sobic006G231700--Sobic001G094500 Sobic006G231700--Sobic006G013900 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic006G231700--Sobic004G137900 Sobic001G157600 Sobic001G157600 Sobic010G256200--Sobic001G157600 Sobic001G123201 Sobic001G123201 Sobic010G256200--Sobic001G123201 Sobic004G242000 Sobic004G242000 Sobic010G256200--Sobic004G242000 Sobic010G256200--Sobic002G051200 Sobic010G256200--Sobic001G154400 Sobic009G060400 Sobic009G060400 Sobic010G256200--Sobic009G060400 Sobic009G030400 Sobic009G030400 Sobic010G256200--Sobic009G030400 Sobic004G318400 Sobic004G318400 Sobic010G256200--Sobic004G318400 Sobic004G272900 Sobic004G272900 Sobic010G256200--Sobic004G272900 Sobic002G113500 Sobic002G113500 Sobic001G154400--Sobic002G113500 Sobic001G154400--Sobic006G013900 Sobic001G336050 Sobic001G336050 Sobic001G154400--Sobic001G336050 Sobic004G102900 Sobic004G102900 Sobic001G154400--Sobic004G102900 Sobic001G154400--Sobic004G318400 Sobic001G154400--Sobic002G051200 Sobic004G063500 Sobic004G063500 Sobic001G154400--Sobic004G063500 Sobic001G154400--Sobic010G256200 Sobic003G325700 Sobic003G325700 Sobic001G154400--Sobic003G325700 Sobic008G111700 Sobic008G111700 Sobic001G349400--Sobic008G111700 Sobic001G285300 Sobic001G285300 Sobic001G349400--Sobic001G285300 Sobic001G349400--Sobic003G434000 Sobic001G349400--Sobic002G051200 Sobic003G024800 Sobic003G024800 Sobic001G349400--Sobic003G024800 Sobic006G143500 Sobic006G143500 Sobic001G349400--Sobic006G143500 Sobic009G036900 Sobic009G036900 Sobic001G349400--Sobic009G036900 Sobic001G127400 Sobic001G127400 Sobic001G349400--Sobic001G127400 Sobic003G420700 Sobic003G420700 Sobic001G349400--Sobic003G420700 Sobic001G066700 Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic003G358300--Sobic006G231700 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic004G032000 Sobic004G032000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic003G358300--Sobic002G386300 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic003G434000--Sobic001G349400 Sobic003G434000--Sobic002G051200 Sobic006G099800 Sobic006G099800 Sobic003G434000--Sobic006G099800 Sobic003G434000--Sobic009G052500 Sobic004G012800 Sobic004G012800 Sobic003G434000--Sobic004G012800 Sobic007G038800 Sobic007G038800 Sobic003G434000--Sobic007G038800 Sobic001G041100 Sobic001G041100 Sobic003G434000--Sobic001G041100 Sobic002G204000 Sobic002G204000 Sobic003G434000--Sobic002G204000 Sobic003G434000--Sobic001G285300 Sobic004G137900--Sobic004G012800 Sobic004G137900--Sobic006G231700 Sobic004G137900--Sobic003G358300 Sobic004G137900--Sobic006G013900 Sobic004G137900--Sobic002G331300 Sobic001G286300 Sobic001G286300 Sobic004G137900--Sobic001G286300 Sobic009G120100 Sobic009G120100 Sobic004G137900--Sobic009G120100 Sobic004G137900--Sobic003G129800 Sobic004G137900--Sobic005G111100 Sobic009G052500--Sobic006G231700 Sobic009G052500--Sobic001G094500 Sobic009G052500--Sobic002G051200 Sobic009G052500--Sobic003G434000 Sobic009G052500--Sobic006G013900 Sobic001G389400 Sobic001G389400 Sobic009G052500--Sobic001G389400 Sobic007G022500 Sobic007G022500 Sobic009G052500--Sobic007G022500 Sobic001G034600 Sobic001G034600 Sobic009G052500--Sobic001G034600 Sobic004G265700 Sobic004G265700 Sobic009G052500--Sobic004G265700
Octagon: transcription factors


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