Gene annotation
Transcriptome id Sobic.009G052500.1
Synonym NRPE7, Sb09g004460
Functional annotation RNA polymerase Rpb7, N-terminal domain containing protein, expressed
UniProt C5Z0L3
Pfam PF03876
Panther DB PTHR12709 PTHR12709:SF3
NCBI CDD KOG3298; DNA-directed RNA polymerase subunit E'
KEGG Orthology K16253; NRPD7, DNA-directed RNA polymerase IV and V subunit 7
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT4G14660 : RNA polymerase Rpb7-like, N-terminal domain
RAP-DB (Rice) LOC_Os05g06490.1 : RNA polymerase Rpb7, N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a042962
Brachypodium KQK07377 , KQK07235
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
2 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
3 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
4 Sobic.003G434000 expressed protein K06170: PSENEN, presenilin enhancer 2
5 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11
6 Sobic.001G389400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
7 Sobic.007G022500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
8 Sobic.001G034600 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
9 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1
10 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
11 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
12 Sobic.005G206700 WD domain, G-beta repeat domain containing protein, expressed K12602: WDR61, REC14, WD repeat-containing protein 61
13 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
14 Sobic.001G127400 yippee zinc-binding protein, putative, expressed -
15 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
16 Sobic.001G285300 expressed protein -
17 Sobic.002G353500 ruvB-like 2, putative, expressed K11338: RUVBL2, RVB2, RuvB-like protein 2
18 Sobic.001G349400 heat shock protein DnaJ, putative, expressed -
19 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
20 Sobic.004G242100 expressed protein -


Gene co-expression network
sample Sobic009G052500 Sobic009G052500 Sobic006G231700 Sobic006G231700 Sobic009G052500--Sobic006G231700 Sobic001G094500 Sobic001G094500 Sobic009G052500--Sobic001G094500 Sobic002G051200 Sobic002G051200 Sobic009G052500--Sobic002G051200 Sobic003G434000 Sobic003G434000 Sobic009G052500--Sobic003G434000 Sobic006G013900 Sobic006G013900 Sobic009G052500--Sobic006G013900 Sobic001G389400 Sobic001G389400 Sobic009G052500--Sobic001G389400 Sobic007G022500 Sobic007G022500 Sobic009G052500--Sobic007G022500 Sobic001G034600 Sobic001G034600 Sobic009G052500--Sobic001G034600 Sobic004G265700 Sobic004G265700 Sobic009G052500--Sobic004G265700 Sobic005G111100 Sobic005G111100 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic006G231700--Sobic001G094500 Sobic006G231700--Sobic006G013900 Sobic003G358300 Sobic003G358300 Sobic006G231700--Sobic003G358300 Sobic001G128400 Sobic001G128400 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic001G094500--Sobic006G231700 Sobic001G094500--Sobic001G128400 Sobic001G094500--Sobic005G111100 Sobic001G094500--Sobic004G265700 Sobic002G279000 Sobic002G279000 Sobic001G094500--Sobic002G279000 Sobic001G532100 Sobic001G532100 Sobic001G094500--Sobic001G532100 Sobic007G152400 Sobic007G152400 Sobic001G094500--Sobic007G152400 Sobic001G529000 Sobic001G529000 Sobic001G094500--Sobic001G529000 Sobic001G094500--Sobic007G163700 Sobic002G051200--Sobic006G013900 Sobic002G051200--Sobic006G231700 Sobic010G256200 Sobic010G256200 Sobic002G051200--Sobic010G256200 Sobic001G154400 Sobic001G154400 Sobic002G051200--Sobic001G154400 Sobic001G349400 Sobic001G349400 Sobic002G051200--Sobic001G349400 Sobic002G051200--Sobic003G358300 Sobic002G051200--Sobic003G434000 Sobic002G051200--Sobic004G137900 Sobic002G051200--Sobic009G052500 Sobic003G434000--Sobic001G349400 Sobic003G434000--Sobic002G051200 Sobic006G099800 Sobic006G099800 Sobic003G434000--Sobic006G099800 Sobic003G434000--Sobic009G052500 Sobic004G012800 Sobic004G012800 Sobic003G434000--Sobic004G012800 Sobic007G038800 Sobic007G038800 Sobic003G434000--Sobic007G038800 Sobic001G041100 Sobic001G041100 Sobic003G434000--Sobic001G041100 Sobic002G204000 Sobic002G204000 Sobic003G434000--Sobic002G204000 Sobic001G285300 Sobic001G285300 Sobic003G434000--Sobic001G285300 Sobic006G013900--Sobic006G231700 Sobic006G013900--Sobic002G051200 Sobic001G162800 Sobic001G162800 Sobic006G013900--Sobic001G162800 Sobic006G013900--Sobic004G137900 Sobic006G013900--Sobic001G154400 Sobic004G343600 Sobic004G343600 Sobic006G013900--Sobic004G343600 Sobic002G331300 Sobic002G331300 Sobic006G013900--Sobic002G331300 Sobic005G206700 Sobic005G206700 Sobic006G013900--Sobic005G206700 Sobic002G386300 Sobic002G386300 Sobic006G013900--Sobic002G386300 Sobic003G249800 Sobic003G249800 Sobic001G389400--Sobic003G249800 Sobic002G068300 Sobic002G068300 Sobic001G389400--Sobic002G068300 Sobic007G190800 Sobic007G190800 Sobic001G389400--Sobic007G190800 Sobic002G022400 Sobic002G022400 Sobic001G389400--Sobic002G022400 Sobic010G257100 Sobic010G257100 Sobic001G389400--Sobic010G257100 Sobic004G152700 Sobic004G152700 Sobic001G389400--Sobic004G152700 Sobic003G321700 Sobic003G321700 Sobic001G389400--Sobic003G321700 Sobic003G429000 Sobic003G429000 Sobic001G389400--Sobic003G429000 Sobic010G230700 Sobic010G230700 Sobic001G389400--Sobic010G230700 Sobic008G094600 Sobic008G094600 Sobic007G022500--Sobic008G094600 Sobic004G032000 Sobic004G032000 Sobic007G022500--Sobic004G032000 Sobic007G022500--Sobic001G517600 Sobic009G191200 Sobic009G191200 Sobic007G022500--Sobic009G191200 Sobic008G098800 Sobic008G098800 Sobic007G022500--Sobic008G098800 Sobic002G044000 Sobic002G044000 Sobic007G022500--Sobic002G044000 Sobic006G108600 Sobic006G108600 Sobic007G022500--Sobic006G108600 Sobic007G022500--Sobic004G137900 Sobic007G022500--Sobic003G358300 Sobic001G034600--Sobic007G163700 Sobic001G034600--Sobic003G358300 Sobic009G036900 Sobic009G036900 Sobic001G034600--Sobic009G036900 Sobic001G034600--Sobic002G044000 Sobic001G034600--Sobic001G517600 Sobic001G034600--Sobic006G231700 Sobic004G122000 Sobic004G122000 Sobic001G034600--Sobic004G122000 Sobic001G034600--Sobic004G032000 Sobic002G373800 Sobic002G373800 Sobic001G034600--Sobic002G373800 Sobic004G265700--Sobic005G111100 Sobic002G078400 Sobic002G078400 Sobic004G265700--Sobic002G078400 Sobic004G265700--Sobic001G041100 Sobic003G362400 Sobic003G362400 Sobic004G265700--Sobic003G362400 Sobic006G141500 Sobic006G141500 Sobic004G265700--Sobic006G141500 Sobic010G065400 Sobic010G065400 Sobic004G265700--Sobic010G065400 Sobic002G116200 Sobic002G116200 Sobic004G265700--Sobic002G116200 Sobic002G222900 Sobic002G222900 Sobic004G265700--Sobic002G222900 Sobic007G068000 Sobic007G068000 Sobic004G265700--Sobic007G068000
Octagon: transcription factors


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