Gene annotation
Transcriptome id Sobic.003G434000.1
Synonym Sb03g046520
Functional annotation expressed protein
UniProt C5XIL3
Pfam PF10251
Panther DB PTHR16318
NCBI CDD KOG3402; Predicted membrane protein
KEGG Orthology K06170; PSENEN, presenilin enhancer 2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G09310 : -
RAP-DB (Rice) LOC_Os01g72960.1 : expressed protein
MaizeGDB (Corn) Zm00025a039078
Brachypodium KQK11650
Barley HORVU3Hr1G110690.2 , HORVU3Hr1G110690.1
Wheat TraesCS3D02G509200 , TraesCS3A02G502800 , TraesCS3B02G566100
Populus -


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cDNA sequences
Sobic.003G434000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G349400 heat shock protein DnaJ, putative, expressed -
2 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
3 Sobic.006G099800 signal recognition particle 19 kDa protein, putative, expressed K03105: signal recognition particle subunit SRP19
4 Sobic.009G052500 RNA polymerase Rpb7, N-terminal domain containing protein, expressed K16253: NRPD7, DNA-directed RNA polymerase IV and V subunit 7
5 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
6 Sobic.007G038800 expressed protein -
7 Sobic.001G041100 RNA recognition motif containing protein, putative, expressed K12833: pre-mRNA branch site protein p14
8 Sobic.002G204000 26S proteasome non-ATPase regulatory subunit 9, putative, expressed K06693: PSMD9, 26S proteasome regulatory subunit N4
9 Sobic.001G285300 expressed protein -
10 Sobic.009G231900 expressed protein -
11 Sobic.009G086200 ubiquitin-conjugating enzyme E2 O, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
12 Sobic.003G227200 mitochondrial import receptor subunit TOM7-1, putative, expressed K17771: mitochondrial import receptor subunit TOM7
13 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
14 Sobic.004G137900 wiskott-Aldrich syndrome protein family member 2, putative, expressed -
15 Sobic.003G429700 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.001G329300 expressed protein -
17 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
18 Sobic.002G254650 - -
19 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
20 Sobic.004G265700 anaphase-promoting complex subunit 11, putative, expressed K03868: RBX1, RING-box protein 1


Gene co-expression network
sample Sobic003G434000 Sobic003G434000 Sobic001G349400 Sobic001G349400 Sobic003G434000--Sobic001G349400 Sobic002G051200 Sobic002G051200 Sobic003G434000--Sobic002G051200 Sobic006G099800 Sobic006G099800 Sobic003G434000--Sobic006G099800 Sobic009G052500 Sobic009G052500 Sobic003G434000--Sobic009G052500 Sobic004G012800 Sobic004G012800 Sobic003G434000--Sobic004G012800 Sobic007G038800 Sobic007G038800 Sobic003G434000--Sobic007G038800 Sobic001G041100 Sobic001G041100 Sobic003G434000--Sobic001G041100 Sobic002G204000 Sobic002G204000 Sobic003G434000--Sobic002G204000 Sobic001G285300 Sobic001G285300 Sobic003G434000--Sobic001G285300 Sobic008G111700 Sobic008G111700 Sobic001G349400--Sobic008G111700 Sobic001G349400--Sobic001G285300 Sobic001G349400--Sobic003G434000 Sobic001G349400--Sobic002G051200 Sobic003G024800 Sobic003G024800 Sobic001G349400--Sobic003G024800 Sobic006G143500 Sobic006G143500 Sobic001G349400--Sobic006G143500 Sobic009G036900 Sobic009G036900 Sobic001G349400--Sobic009G036900 Sobic001G127400 Sobic001G127400 Sobic001G349400--Sobic001G127400 Sobic003G420700 Sobic003G420700 Sobic001G349400--Sobic003G420700 Sobic006G013900 Sobic006G013900 Sobic002G051200--Sobic006G013900 Sobic006G231700 Sobic006G231700 Sobic002G051200--Sobic006G231700 Sobic010G256200 Sobic010G256200 Sobic002G051200--Sobic010G256200 Sobic001G154400 Sobic001G154400 Sobic002G051200--Sobic001G154400 Sobic002G051200--Sobic001G349400 Sobic003G358300 Sobic003G358300 Sobic002G051200--Sobic003G358300 Sobic002G051200--Sobic003G434000 Sobic004G137900 Sobic004G137900 Sobic002G051200--Sobic004G137900 Sobic002G051200--Sobic009G052500 Sobic002G276900 Sobic002G276900 Sobic006G099800--Sobic002G276900 Sobic006G099800--Sobic007G038800 Sobic001G148700 Sobic001G148700 Sobic006G099800--Sobic001G148700 Sobic003G227200 Sobic003G227200 Sobic006G099800--Sobic003G227200 Sobic006G099800--Sobic003G434000 Sobic007G192100 Sobic007G192100 Sobic006G099800--Sobic007G192100 Sobic008G108500 Sobic008G108500 Sobic006G099800--Sobic008G108500 Sobic003G031200 Sobic003G031200 Sobic006G099800--Sobic003G031200 Sobic004G028800 Sobic004G028800 Sobic006G099800--Sobic004G028800 Sobic009G052500--Sobic006G231700 Sobic001G094500 Sobic001G094500 Sobic009G052500--Sobic001G094500 Sobic009G052500--Sobic002G051200 Sobic009G052500--Sobic003G434000 Sobic009G052500--Sobic006G013900 Sobic001G389400 Sobic001G389400 Sobic009G052500--Sobic001G389400 Sobic007G022500 Sobic007G022500 Sobic009G052500--Sobic007G022500 Sobic001G034600 Sobic001G034600 Sobic009G052500--Sobic001G034600 Sobic004G265700 Sobic004G265700 Sobic009G052500--Sobic004G265700 Sobic004G012800--Sobic004G137900 Sobic006G231500 Sobic006G231500 Sobic004G012800--Sobic006G231500 Sobic004G012800--Sobic006G231700 Sobic009G001900 Sobic009G001900 Sobic004G012800--Sobic009G001900 Sobic002G254650 Sobic002G254650 Sobic004G012800--Sobic002G254650 Sobic005G111100 Sobic005G111100 Sobic004G012800--Sobic005G111100 Sobic004G012800--Sobic003G358300 Sobic006G094600 Sobic006G094600 Sobic004G012800--Sobic006G094600 Sobic001G532100 Sobic001G532100 Sobic004G012800--Sobic001G532100 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic003G189900 Sobic003G189900 Sobic007G038800--Sobic003G189900 Sobic007G038800--Sobic007G192100 Sobic009G034400 Sobic009G034400 Sobic007G038800--Sobic009G034400 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic007G038800--Sobic008G108500 Sobic001G126200 Sobic001G126200 Sobic007G038800--Sobic001G126200 Sobic001G041100--Sobic004G265700 Sobic006G141500 Sobic006G141500 Sobic001G041100--Sobic006G141500 Sobic010G163600 Sobic010G163600 Sobic001G041100--Sobic010G163600 Sobic003G362400 Sobic003G362400 Sobic001G041100--Sobic003G362400 Sobic001G066700 Sobic001G066700 Sobic001G041100--Sobic001G066700 Sobic010G213400 Sobic010G213400 Sobic001G041100--Sobic010G213400 Sobic006G010600 Sobic006G010600 Sobic001G041100--Sobic006G010600 Sobic009G191600 Sobic009G191600 Sobic001G041100--Sobic009G191600 Sobic007G203700 Sobic007G203700 Sobic001G041100--Sobic007G203700 Sobic001G038100 Sobic001G038100 Sobic002G204000--Sobic001G038100 Sobic004G186000 Sobic004G186000 Sobic002G204000--Sobic004G186000 Sobic004G316900 Sobic004G316900 Sobic002G204000--Sobic004G316900 Sobic004G019600 Sobic004G019600 Sobic002G204000--Sobic004G019600 Sobic001G329300 Sobic001G329300 Sobic002G204000--Sobic001G329300 Sobic010G193800 Sobic010G193800 Sobic002G204000--Sobic010G193800 Sobic004G226800 Sobic004G226800 Sobic002G204000--Sobic004G226800 Sobic001G136900 Sobic001G136900 Sobic002G204000--Sobic001G136900 Sobic001G507400 Sobic001G507400 Sobic002G204000--Sobic001G507400 Sobic001G285300--Sobic008G111700 Sobic001G285300--Sobic001G532100 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G036700 Sobic001G036700 Sobic001G285300--Sobic001G036700 Sobic001G285300--Sobic001G126200 Sobic001G285300--Sobic003G420700 Sobic001G402300 Sobic001G402300 Sobic001G285300--Sobic001G402300 Sobic001G285300--Sobic006G094600
Octagon: transcription factors


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