Gene annotation
Transcriptome id Sobic.009G086200.1
Synonym PFU1, Sb09g007960, UBC25
Functional annotation ubiquitin-conjugating enzyme E2 O, putative, expressed
UniProt C5YV69
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF127
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K10581; ubiquitin-conjugating enzyme E2 O
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G15355 : ubiquitin-conjugating enzyme 25
RAP-DB (Rice) LOC_Os05g14300.1 : ubiquitin-conjugating enzyme E2 O, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQK06933 , KQK06936 , KQK06935 , KQK06934
Barley HORVU1Hr1G029800.14 , HORVU1Hr1G029800.10 , HORVU1Hr1G029800.11 , HORVU1Hr1G029800.12 , HORVU1Hr1G029800.13 , HORVU1Hr1G029800.6 , HORVU1Hr1G029800.2 , HORVU1Hr1G029800.3 , HORVU1Hr1G029800.7 , HORVU1Hr1G029800.1 , HORVU1Hr1G029800.8 , HORVU1Hr1G029800.9
Wheat TraesCS1D02G125200 , TraesCS1D02G125200 , TraesCS1B02G146400 , TraesCS1B02G146400 , TraesCS1A02G129500 , TraesCS1A02G129500 , TraesCS5B02G264000 , TraesCS5D02G272400 , TraesCS5D02G272300
Populus -


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cDNA sequences
Sobic.009G086200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G176400 ubiquitin domain-containing protein 2, putative, expressed -
2 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
3 Sobic.001G285300 expressed protein -
4 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
5 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
6 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
7 Sobic.004G048700 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
8 Sobic.007G038800 expressed protein -
9 Sobic.008G108500 histone deacetylase 6, putative, expressed -
10 Sobic.003G189900 expressed protein -
11 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
12 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
13 Sobic.003G434000 expressed protein K06170: PSENEN, presenilin enhancer 2
14 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
15 Sobic.003G148900 translation machinery-associated protein 20, putative, expressed K07575: PUA domain protein
16 Sobic.001G349400 heat shock protein DnaJ, putative, expressed -
17 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
18 Sobic.001G066700 GLTP domain containing protein, putative, expressed -
19 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
20 Sobic.010G256200 expressed protein -


Gene co-expression network
sample Sobic009G086200 Sobic009G086200 Sobic002G176400 Sobic002G176400 Sobic009G086200--Sobic002G176400 Sobic001G036700 Sobic001G036700 Sobic009G086200--Sobic001G036700 Sobic001G285300 Sobic001G285300 Sobic009G086200--Sobic001G285300 Sobic001G532100 Sobic001G532100 Sobic009G086200--Sobic001G532100 Sobic003G043400 Sobic003G043400 Sobic009G086200--Sobic003G043400 Sobic007G192100 Sobic007G192100 Sobic009G086200--Sobic007G192100 Sobic004G048700 Sobic004G048700 Sobic009G086200--Sobic004G048700 Sobic007G038800 Sobic007G038800 Sobic009G086200--Sobic007G038800 Sobic008G108500 Sobic008G108500 Sobic009G086200--Sobic008G108500 Sobic002G176400--Sobic001G036700 Sobic002G176400--Sobic008G108500 Sobic004G122000 Sobic004G122000 Sobic002G176400--Sobic004G122000 Sobic002G176400--Sobic007G192100 Sobic003G189900 Sobic003G189900 Sobic002G176400--Sobic003G189900 Sobic002G176400--Sobic009G086200 Sobic001G126200 Sobic001G126200 Sobic002G176400--Sobic001G126200 Sobic009G034400 Sobic009G034400 Sobic002G176400--Sobic009G034400 Sobic002G176400--Sobic007G038800 Sobic001G036700--Sobic001G532100 Sobic001G036700--Sobic002G176400 Sobic001G036700--Sobic007G192100 Sobic001G036700--Sobic001G285300 Sobic006G094600 Sobic006G094600 Sobic001G036700--Sobic006G094600 Sobic001G036700--Sobic001G126200 Sobic003G131300 Sobic003G131300 Sobic001G036700--Sobic003G131300 Sobic003G420700 Sobic003G420700 Sobic001G036700--Sobic003G420700 Sobic001G036700--Sobic009G086200 Sobic008G111700 Sobic008G111700 Sobic001G285300--Sobic008G111700 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G285300--Sobic001G036700 Sobic001G285300--Sobic001G126200 Sobic001G285300--Sobic003G420700 Sobic001G402300 Sobic001G402300 Sobic001G285300--Sobic001G402300 Sobic001G285300--Sobic006G094600 Sobic008G137600 Sobic008G137600 Sobic001G532100--Sobic008G137600 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G532100--Sobic001G285300 Sobic001G294900 Sobic001G294900 Sobic001G532100--Sobic001G294900 Sobic007G152400 Sobic007G152400 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic007G192100--Sobic008G108500 Sobic007G192100--Sobic001G036700 Sobic001G402600 Sobic001G402600 Sobic007G192100--Sobic001G402600 Sobic007G192100--Sobic002G176400 Sobic007G192100--Sobic001G126200 Sobic007G192100--Sobic007G038800 Sobic001G392800 Sobic001G392800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G117800 Sobic007G117800 Sobic007G192100--Sobic007G117800 Sobic004G048700--Sobic004G122000 Sobic007G219800 Sobic007G219800 Sobic004G048700--Sobic007G219800 Sobic003G358300 Sobic003G358300 Sobic004G048700--Sobic003G358300 Sobic004G048700--Sobic009G086200 Sobic010G153100 Sobic010G153100 Sobic004G048700--Sobic010G153100 Sobic004G048700--Sobic007G192100 Sobic006G239300 Sobic006G239300 Sobic004G048700--Sobic006G239300 Sobic003G281200 Sobic003G281200 Sobic004G048700--Sobic003G281200 Sobic004G048700--Sobic007G038800 Sobic009G036900 Sobic009G036900 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic007G038800--Sobic003G189900 Sobic007G038800--Sobic007G192100 Sobic007G038800--Sobic009G034400 Sobic006G099800 Sobic006G099800 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic007G038800--Sobic008G108500 Sobic007G038800--Sobic001G126200 Sobic008G108500--Sobic007G192100 Sobic008G108500--Sobic002G176400 Sobic008G108500--Sobic003G189900 Sobic002G401700 Sobic002G401700 Sobic008G108500--Sobic002G401700 Sobic008G108500--Sobic001G036700 Sobic008G108500--Sobic007G038800 Sobic008G108500--Sobic004G122000 Sobic008G108500--Sobic007G117800 Sobic008G108500--Sobic009G086200
Octagon: transcription factors


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