Gene annotation
Transcriptome id Sobic.004G122000.2
Synonym LCV1, Sb04g010180
Functional annotation protein of unknown function DUF502 domain containing protein, expressed
UniProt A0A1Z5RM87
Pfam PF04367
Panther DB PTHR31876 PTHR31876:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G20130 : like COV 1
RAP-DB (Rice) LOC_Os02g16880.1 : protein of unknown function DUF502 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034381
Brachypodium KQJ94342 , PNT66312
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
2 Sobic.004G048700 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
3 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
4 Sobic.002G176400 ubiquitin domain-containing protein 2, putative, expressed -
5 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
6 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
7 Sobic.008G108500 histone deacetylase 6, putative, expressed -
8 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
9 Sobic.001G285300 expressed protein -
10 Sobic.002G121000 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.007G038800 expressed protein -
12 Sobic.001G424500 mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
13 Sobic.003G101300 expressed protein -
14 Sobic.001G281700 zinc finger, C3HC4 type domain containing protein, expressed K10666: E3 ubiquitin-protein ligase RNF5
15 Sobic.001G367000 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
16 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
17 Sobic.001G034600 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
18 Sobic.010G228600 LSM domain containing protein, expressed -
19 Sobic.009G086200 ubiquitin-conjugating enzyme E2 O, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
20 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1


Gene co-expression network
sample Sobic004G122000 Sobic004G122000 Sobic009G034400 Sobic009G034400 Sobic004G122000--Sobic009G034400 Sobic004G048700 Sobic004G048700 Sobic004G122000--Sobic004G048700 Sobic009G036900 Sobic009G036900 Sobic004G122000--Sobic009G036900 Sobic002G176400 Sobic002G176400 Sobic004G122000--Sobic002G176400 Sobic003G416600 Sobic003G416600 Sobic004G122000--Sobic003G416600 Sobic001G036700 Sobic001G036700 Sobic004G122000--Sobic001G036700 Sobic008G108500 Sobic008G108500 Sobic004G122000--Sobic008G108500 Sobic007G192100 Sobic007G192100 Sobic004G122000--Sobic007G192100 Sobic001G285300 Sobic001G285300 Sobic004G122000--Sobic001G285300 Sobic009G034400--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic009G034400--Sobic003G024800 Sobic009G034400--Sobic004G122000 Sobic010G071200 Sobic010G071200 Sobic009G034400--Sobic010G071200 Sobic010G228600 Sobic010G228600 Sobic009G034400--Sobic010G228600 Sobic001G424500 Sobic001G424500 Sobic009G034400--Sobic001G424500 Sobic006G257900 Sobic006G257900 Sobic009G034400--Sobic006G257900 Sobic002G179500 Sobic002G179500 Sobic009G034400--Sobic002G179500 Sobic001G309100 Sobic001G309100 Sobic009G034400--Sobic001G309100 Sobic004G048700--Sobic004G122000 Sobic007G219800 Sobic007G219800 Sobic004G048700--Sobic007G219800 Sobic003G358300 Sobic003G358300 Sobic004G048700--Sobic003G358300 Sobic009G086200 Sobic009G086200 Sobic004G048700--Sobic009G086200 Sobic010G153100 Sobic010G153100 Sobic004G048700--Sobic010G153100 Sobic004G048700--Sobic007G192100 Sobic006G239300 Sobic006G239300 Sobic004G048700--Sobic006G239300 Sobic003G281200 Sobic003G281200 Sobic004G048700--Sobic003G281200 Sobic007G038800 Sobic007G038800 Sobic004G048700--Sobic007G038800 Sobic002G068300 Sobic002G068300 Sobic009G036900--Sobic002G068300 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic009G036900--Sobic003G024800 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic001G529000 Sobic001G529000 Sobic009G036900--Sobic001G529000 Sobic009G036900--Sobic010G071200 Sobic009G036900--Sobic001G424500 Sobic002G176400--Sobic001G036700 Sobic002G176400--Sobic008G108500 Sobic002G176400--Sobic004G122000 Sobic002G176400--Sobic007G192100 Sobic003G189900 Sobic003G189900 Sobic002G176400--Sobic003G189900 Sobic002G176400--Sobic009G086200 Sobic001G126200 Sobic001G126200 Sobic002G176400--Sobic001G126200 Sobic002G176400--Sobic009G034400 Sobic002G176400--Sobic007G038800 Sobic003G416600--Sobic004G122000 Sobic009G232800 Sobic009G232800 Sobic003G416600--Sobic009G232800 Sobic003G416600--Sobic009G036900 Sobic002G276900 Sobic002G276900 Sobic003G416600--Sobic002G276900 Sobic004G248800 Sobic004G248800 Sobic003G416600--Sobic004G248800 Sobic003G403400 Sobic003G403400 Sobic003G416600--Sobic003G403400 Sobic003G416600--Sobic009G034400 Sobic006G062800 Sobic006G062800 Sobic003G416600--Sobic006G062800 Sobic001G367000 Sobic001G367000 Sobic003G416600--Sobic001G367000 Sobic001G532100 Sobic001G532100 Sobic001G036700--Sobic001G532100 Sobic001G036700--Sobic002G176400 Sobic001G036700--Sobic007G192100 Sobic001G036700--Sobic001G285300 Sobic006G094600 Sobic006G094600 Sobic001G036700--Sobic006G094600 Sobic001G036700--Sobic001G126200 Sobic003G131300 Sobic003G131300 Sobic001G036700--Sobic003G131300 Sobic003G420700 Sobic003G420700 Sobic001G036700--Sobic003G420700 Sobic001G036700--Sobic009G086200 Sobic008G108500--Sobic007G192100 Sobic008G108500--Sobic002G176400 Sobic008G108500--Sobic003G189900 Sobic002G401700 Sobic002G401700 Sobic008G108500--Sobic002G401700 Sobic008G108500--Sobic001G036700 Sobic008G108500--Sobic007G038800 Sobic008G108500--Sobic004G122000 Sobic007G117800 Sobic007G117800 Sobic008G108500--Sobic007G117800 Sobic008G108500--Sobic009G086200 Sobic007G192100--Sobic008G108500 Sobic007G192100--Sobic001G036700 Sobic001G402600 Sobic001G402600 Sobic007G192100--Sobic001G402600 Sobic007G192100--Sobic002G176400 Sobic007G192100--Sobic001G126200 Sobic007G192100--Sobic007G038800 Sobic001G392800 Sobic001G392800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G192100--Sobic007G117800 Sobic008G111700 Sobic008G111700 Sobic001G285300--Sobic008G111700 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G285300--Sobic001G036700 Sobic001G285300--Sobic001G126200 Sobic001G285300--Sobic003G420700 Sobic001G402300 Sobic001G402300 Sobic001G285300--Sobic001G402300 Sobic001G285300--Sobic006G094600
Octagon: transcription factors


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