Gene annotation
Transcriptome id Sobic.004G048700.1
Synonym Sb04g004150
Functional annotation SCO1 protein homolog, mitochondrial precursor, putative, expressed
UniProt C5XVE3
Pfam PF00578
Panther DB PTHR12151 PTHR12151:SF5
NCBI CDD KOG2792; Putative cytochrome C oxidase assembly protein
KEGG Orthology K07152; protein SCO1
Gene Ontology GO:0016491; oxidoreductase activity GO:0016209antioxidant activity


Orthologs (automatic annotation)
TAIR AT3G08950 : electron transport SCO1/SenC family protein
RAP-DB (Rice) LOC_Os02g06480.1 : SCO1 protein homolog, mitochondrial precursor, putative, expressed
MaizeGDB (Corn) Zm00025a019027
Brachypodium KQK17236 , KQK17237
Barley HORVU7Hr1G101260.1 , HORVU7Hr1G101260.3 , HORVU7Hr1G101260.2 , HORVU7Hr1G101260.5 , HORVU7Hr1G101260.4
Wheat TraesCS7D02G435100 , TraesCS7A02G446800 , TraesCS7A02G446800 , TraesCS7B02G346600
Populus -


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cDNA sequences
Sobic.004G048700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
2 Sobic.007G219800 cytochrome c oxidase assembly protein COX15, putative, expressed K02259: COX15, cytochrome c oxidase assembly protein subunit 15
3 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
4 Sobic.009G086200 ubiquitin-conjugating enzyme E2 O, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
5 Sobic.010G153100 prefoldin, putative, expressed K14009: BCAP31, B-cell receptor-associated protein 31
6 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
7 Sobic.006G239300 thiamine-repressible mitochondrial transport protein THI74, putative, expressed K15289: solute carrier family 35, member F5
8 Sobic.003G281200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosyl transferase, putative, expressed -
9 Sobic.007G038800 expressed protein -
10 Sobic.008G108500 histone deacetylase 6, putative, expressed -
11 Sobic.004G123000 expressed protein -
12 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
13 Sobic.001G402600 expressed protein -
14 Sobic.003G416600 mitochondrial carrier protein, putative, expressed K15108: SLC25A19, DNC, solute carrier family 25 (mitochondrial thiamine pyrophosphate transporter), member 19
15 Sobic.001G285300 expressed protein -
16 Sobic.002G176400 ubiquitin domain-containing protein 2, putative, expressed -
17 Sobic.007G022500 RNA recognition motif containing protein, putative, expressed K03248: translation initiation factor 3 subunit G
18 Sobic.006G143500 expressed protein -
19 Sobic.001G286300 - -
20 Sobic.001G066700 GLTP domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G048700 Sobic004G048700 Sobic004G122000 Sobic004G122000 Sobic004G048700--Sobic004G122000 Sobic007G219800 Sobic007G219800 Sobic004G048700--Sobic007G219800 Sobic003G358300 Sobic003G358300 Sobic004G048700--Sobic003G358300 Sobic009G086200 Sobic009G086200 Sobic004G048700--Sobic009G086200 Sobic010G153100 Sobic010G153100 Sobic004G048700--Sobic010G153100 Sobic007G192100 Sobic007G192100 Sobic004G048700--Sobic007G192100 Sobic006G239300 Sobic006G239300 Sobic004G048700--Sobic006G239300 Sobic003G281200 Sobic003G281200 Sobic004G048700--Sobic003G281200 Sobic007G038800 Sobic007G038800 Sobic004G048700--Sobic007G038800 Sobic009G034400 Sobic009G034400 Sobic004G122000--Sobic009G034400 Sobic004G122000--Sobic004G048700 Sobic009G036900 Sobic009G036900 Sobic004G122000--Sobic009G036900 Sobic002G176400 Sobic002G176400 Sobic004G122000--Sobic002G176400 Sobic003G416600 Sobic003G416600 Sobic004G122000--Sobic003G416600 Sobic001G036700 Sobic001G036700 Sobic004G122000--Sobic001G036700 Sobic008G108500 Sobic008G108500 Sobic004G122000--Sobic008G108500 Sobic004G122000--Sobic007G192100 Sobic001G285300 Sobic001G285300 Sobic004G122000--Sobic001G285300 Sobic007G219800--Sobic004G048700 Sobic009G226700 Sobic009G226700 Sobic007G219800--Sobic009G226700 Sobic009G191400 Sobic009G191400 Sobic007G219800--Sobic009G191400 Sobic001G181500 Sobic001G181500 Sobic007G219800--Sobic001G181500 Sobic002G342000 Sobic002G342000 Sobic007G219800--Sobic002G342000 Sobic007G012900 Sobic007G012900 Sobic007G219800--Sobic007G012900 Sobic010G007400 Sobic010G007400 Sobic007G219800--Sobic010G007400 Sobic004G030000 Sobic004G030000 Sobic007G219800--Sobic004G030000 Sobic001G206700 Sobic001G206700 Sobic007G219800--Sobic001G206700 Sobic001G066700 Sobic001G066700 Sobic003G358300--Sobic001G066700 Sobic006G231700 Sobic006G231700 Sobic003G358300--Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic003G358300--Sobic005G111100 Sobic002G044000 Sobic002G044000 Sobic003G358300--Sobic002G044000 Sobic004G032000 Sobic004G032000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic002G386300 Sobic002G386300 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic009G086200--Sobic002G176400 Sobic009G086200--Sobic001G036700 Sobic009G086200--Sobic001G285300 Sobic001G532100 Sobic001G532100 Sobic009G086200--Sobic001G532100 Sobic003G043400 Sobic003G043400 Sobic009G086200--Sobic003G043400 Sobic009G086200--Sobic007G192100 Sobic009G086200--Sobic004G048700 Sobic009G086200--Sobic007G038800 Sobic009G086200--Sobic008G108500 Sobic001G084900 Sobic001G084900 Sobic010G153100--Sobic001G084900 Sobic001G224400 Sobic001G224400 Sobic010G153100--Sobic001G224400 Sobic003G155400 Sobic003G155400 Sobic010G153100--Sobic003G155400 Sobic001G445800 Sobic001G445800 Sobic010G153100--Sobic001G445800 Sobic010G154700 Sobic010G154700 Sobic010G153100--Sobic010G154700 Sobic010G213400 Sobic010G213400 Sobic010G153100--Sobic010G213400 Sobic007G115100 Sobic007G115100 Sobic010G153100--Sobic007G115100 Sobic001G067601 Sobic001G067601 Sobic010G153100--Sobic001G067601 Sobic006G141500 Sobic006G141500 Sobic010G153100--Sobic006G141500 Sobic007G192100--Sobic008G108500 Sobic007G192100--Sobic001G036700 Sobic001G402600 Sobic001G402600 Sobic007G192100--Sobic001G402600 Sobic007G192100--Sobic002G176400 Sobic001G126200 Sobic001G126200 Sobic007G192100--Sobic001G126200 Sobic007G192100--Sobic007G038800 Sobic001G392800 Sobic001G392800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G117800 Sobic007G117800 Sobic007G192100--Sobic007G117800 Sobic010G262300 Sobic010G262300 Sobic006G239300--Sobic010G262300 Sobic004G123000 Sobic004G123000 Sobic006G239300--Sobic004G123000 Sobic006G239300--Sobic010G153100 Sobic006G239300--Sobic003G358300 Sobic006G239300--Sobic001G066700 Sobic001G389900 Sobic001G389900 Sobic006G239300--Sobic001G389900 Sobic006G062800 Sobic006G062800 Sobic006G239300--Sobic006G062800 Sobic003G072300 Sobic003G072300 Sobic006G239300--Sobic003G072300 Sobic002G362000 Sobic002G362000 Sobic006G239300--Sobic002G362000 Sobic006G143500 Sobic006G143500 Sobic003G281200--Sobic006G143500 Sobic003G281200--Sobic004G048700 Sobic010G039800 Sobic010G039800 Sobic003G281200--Sobic010G039800 Sobic002G373800 Sobic002G373800 Sobic003G281200--Sobic002G373800 Sobic002G263800 Sobic002G263800 Sobic003G281200--Sobic002G263800 Sobic009G068800 Sobic009G068800 Sobic003G281200--Sobic009G068800 Sobic001G517600 Sobic001G517600 Sobic003G281200--Sobic001G517600 Sobic010G257100 Sobic010G257100 Sobic003G281200--Sobic010G257100 Sobic010G173100 Sobic010G173100 Sobic003G281200--Sobic010G173100 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic003G189900 Sobic003G189900 Sobic007G038800--Sobic003G189900 Sobic007G038800--Sobic007G192100 Sobic007G038800--Sobic009G034400 Sobic006G099800 Sobic006G099800 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic007G038800--Sobic008G108500 Sobic007G038800--Sobic001G126200
Octagon: transcription factors


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