Gene annotation
| Transcriptome id | Sobic.003G281200.1 |
|---|---|
| Synonym | Sb03g033270, PRS3 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) phosphoribosyl transferase, putative, expressed |
| UniProt | C5XIE7 |
| Pfam | PF13793 PF00156 |
| Panther DB | PTHR10210 PTHR10210:SF45 |
| NCBI CDD | KOG1448; Ribose-phosphate pyrophosphokinase |
| KEGG Orthology | - |
| Gene Ontology | GO:0009116; nucleoside metabolic process |
Orthologs (automatic annotation)
| TAIR | AT1G10700 : phosphoribosyl pyrophosphate (PRPP) synthase 3 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g52530.1 : phosphoribosyl transferase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a027738 |
| Brachypodium | KQK09537 |
| Barley | HORVU3Hr1G068700.4 , HORVU3Hr1G068700.5 , HORVU3Hr1G068700.6 , HORVU3Hr1G068700.7 , HORVU3Hr1G068700.1 , HORVU3Hr1G068700.2 , HORVU3Hr1G068700.3 |
| Wheat | TraesCS3B02G319600 , TraesCS3A02G285700 , TraesCS3D02G285500 , TraesCS3D02G285500 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.006G143500 | expressed protein | - |
| 2 | Sobic.004G048700 | SCO1 protein homolog, mitochondrial precursor, putative, expressed | K07152: protein SCO1 |
| 3 | Sobic.010G039800 | expressed protein | - |
| 4 | Sobic.002G373800 | elongation factor protein, putative, expressed | K03232: elongation factor 1-beta |
| 5 | Sobic.002G263800 | peptidase, T1 family, putative, expressed | K02736: 20S proteasome subunit beta 7 |
| 6 | Sobic.009G068800 | expressed protein | - |
| 7 | Sobic.001G517600 | ribosomal L18p/L5e family protein, putative, expressed | K02932: RP-L5e, large subunit ribosomal protein L5e |
| 8 | Sobic.010G257100 | CGMC_MAPKCMGC_2.11 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed | K04371: ERK, mitogen-activated protein kinase 1/3 |
| 9 | Sobic.010G173100 | elongation factor 1-gamma, putative, expressed | K03233: elongation factor 1-gamma |
| 10 | Sobic.010G046300 | rRNA-processing protein FCF, putative, expressed | K14566: UTP24, U3 small nucleolar RNA-associated protein 24 |
| 11 | Sobic.003G381000 | transcriptional regulator, putative, expressed | - |
| 12 | Sobic.008G130400 | prefoldin, putative, expressed | - |
| 13 | Sobic.004G166500 | N-carbamoylputrescine amidohydrolase(PubMedID : 27325899)@Up-regulated by silicon application under drought stress(PubMedID : 24813726)@N-carbamoylputrescine amidase, putative, expressed | K12251: N-carbamoylputrescine amidase |
| 14 | Sobic.010G072300 | sucrose synthase(PubMedID : 26616172)@"Sh1(Ortholog in maize:Jiang et al., 2013)"(PubMedID : 31659931)@sucrose synthase, putative, expressed | K00695: sucrose synthase |
| 15 | Sobic.004G122000 | protein of unknown function DUF502 domain containing protein, expressed | - |
| 16 | Sobic.003G358300 | josephin, putative, expressed | K11863: ATXN3, Ataxin-3 |
| 17 | Sobic.004G032000 | peptidase, T1 family, putative, expressed | K02725: 20S proteasome subunit alpha 6 |
| 18 | Sobic.009G036900 | RNA recognition motif containing protein, putative, expressed | K12876: RBM8A, RNA-binding protein 8A |
| 19 | Sobic.010G042800 | peptidase, T1 family, putative, expressed | K02737: 20S proteasome subunit beta 5 |
| 20 | Sobic.001G201100 | cytochrome b561, putative, expressed | K08360: cytochrome b-561 |
Gene co-expression network
Octagon: transcription factors
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