Gene annotation
Transcriptome id Sobic.009G036900.1
Synonym Y14, Sb09g003130
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt C5YZM3
Pfam PF00076
Panther DB PTHR23139
NCBI CDD KOG0130; RNA-binding protein RBM8/Tsunagi (RRM superfamily)
KEGG Orthology K12876; RBM8A, RNA-binding protein 8A
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G51510 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os05g04850.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a038118 , Zm00025a055356
Brachypodium -
Barley -
Wheat TraesCS1D02G084600 , TraesCS1B02G100800
Populus -


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cDNA sequences
Sobic.009G036900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G068300 vesicle-associated membrane protein, putative, expressed K08511: vesicle-associated membrane protein 72
2 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
3 Sobic.006G256500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
4 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
5 Sobic.010G228600 LSM domain containing protein, expressed -
6 Sobic.010G039800 expressed protein -
7 Sobic.001G529000 THO complex subunit 7, putative, expressed K13176: THO complex subunit 7
8 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
9 Sobic.001G424500 mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
10 Sobic.007G038800 expressed protein -
11 Sobic.007G126200 mitosis protein dim1, putative, expressed K12859: TXNL4A, U5 snRNP protein, DIM1 family
12 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
13 Sobic.010G238700 dynamin family protein, putative, expressed K12483: EH domain-containing protein 1
14 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
15 Sobic.003G420700 expressed protein -
16 Sobic.004G248800 ADP-ribosylation factor, putative, expressed K07955: ADP-ribosylation factor-like protein 8
17 Sobic.008G142700 expressed protein -
18 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
19 Sobic.007G163700 zinc finger protein 593, putative, expressed K14821: bud site selection protein 20
20 Sobic.010G144400 glycosyltransferase, putative, expressed -


Gene co-expression network
sample Sobic009G036900 Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic009G036900--Sobic002G068300 Sobic009G034400 Sobic009G034400 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic003G024800 Sobic003G024800 Sobic009G036900--Sobic003G024800 Sobic010G228600 Sobic010G228600 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic001G529000 Sobic001G529000 Sobic009G036900--Sobic001G529000 Sobic010G071200 Sobic010G071200 Sobic009G036900--Sobic010G071200 Sobic001G424500 Sobic001G424500 Sobic009G036900--Sobic001G424500 Sobic002G068300--Sobic009G036900 Sobic002G068300--Sobic010G228600 Sobic009G016201 Sobic009G016201 Sobic002G068300--Sobic009G016201 Sobic002G068300--Sobic006G256500 Sobic010G144400 Sobic010G144400 Sobic002G068300--Sobic010G144400 Sobic003G249800 Sobic003G249800 Sobic002G068300--Sobic003G249800 Sobic002G282400 Sobic002G282400 Sobic002G068300--Sobic002G282400 Sobic001G389400 Sobic001G389400 Sobic002G068300--Sobic001G389400 Sobic002G205300 Sobic002G205300 Sobic002G068300--Sobic002G205300 Sobic009G034400--Sobic009G036900 Sobic009G034400--Sobic003G024800 Sobic004G122000 Sobic004G122000 Sobic009G034400--Sobic004G122000 Sobic009G034400--Sobic010G071200 Sobic009G034400--Sobic010G228600 Sobic009G034400--Sobic001G424500 Sobic006G257900 Sobic006G257900 Sobic009G034400--Sobic006G257900 Sobic002G179500 Sobic002G179500 Sobic009G034400--Sobic002G179500 Sobic001G309100 Sobic001G309100 Sobic009G034400--Sobic001G309100 Sobic006G256500--Sobic009G036900 Sobic006G256500--Sobic002G068300 Sobic004G248800 Sobic004G248800 Sobic006G256500--Sobic004G248800 Sobic007G163700 Sobic007G163700 Sobic006G256500--Sobic007G163700 Sobic006G256500--Sobic001G529000 Sobic006G256500--Sobic010G039800 Sobic006G256500--Sobic009G016201 Sobic001G162000 Sobic001G162000 Sobic006G256500--Sobic001G162000 Sobic010G243200 Sobic010G243200 Sobic006G256500--Sobic010G243200 Sobic003G024800--Sobic009G036900 Sobic004G349100 Sobic004G349100 Sobic003G024800--Sobic004G349100 Sobic003G024800--Sobic001G309100 Sobic003G024800--Sobic009G034400 Sobic001G350501 Sobic001G350501 Sobic003G024800--Sobic001G350501 Sobic007G063200 Sobic007G063200 Sobic003G024800--Sobic007G063200 Sobic003G024800--Sobic010G071200 Sobic008G142700 Sobic008G142700 Sobic003G024800--Sobic008G142700 Sobic003G024800--Sobic010G228600 Sobic010G228600--Sobic009G036900 Sobic010G228600--Sobic002G068300 Sobic001G056700 Sobic001G056700 Sobic010G228600--Sobic001G056700 Sobic001G471900 Sobic001G471900 Sobic010G228600--Sobic001G471900 Sobic010G228600--Sobic010G144400 Sobic010G228600--Sobic010G071200 Sobic010G228600--Sobic009G034400 Sobic001G149700 Sobic001G149700 Sobic010G228600--Sobic001G149700 Sobic004G164500 Sobic004G164500 Sobic010G228600--Sobic004G164500 Sobic002G263800 Sobic002G263800 Sobic010G039800--Sobic002G263800 Sobic007G095400 Sobic007G095400 Sobic010G039800--Sobic007G095400 Sobic010G039800--Sobic004G248800 Sobic010G039800--Sobic001G529000 Sobic008G161800 Sobic008G161800 Sobic010G039800--Sobic008G161800 Sobic010G039800--Sobic009G016201 Sobic002G218000 Sobic002G218000 Sobic010G039800--Sobic002G218000 Sobic002G373800 Sobic002G373800 Sobic010G039800--Sobic002G373800 Sobic010G039800--Sobic009G036900 Sobic003G362400 Sobic003G362400 Sobic001G529000--Sobic003G362400 Sobic001G529000--Sobic004G248800 Sobic003G124800 Sobic003G124800 Sobic001G529000--Sobic003G124800 Sobic001G331900 Sobic001G331900 Sobic001G529000--Sobic001G331900 Sobic005G157200 Sobic005G157200 Sobic001G529000--Sobic005G157200 Sobic001G529000--Sobic007G163700 Sobic001G529000--Sobic010G039800 Sobic007G203700 Sobic007G203700 Sobic001G529000--Sobic007G203700 Sobic004G300900 Sobic004G300900 Sobic001G529000--Sobic004G300900 Sobic010G055500 Sobic010G055500 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G071200--Sobic004G231400 Sobic004G263900 Sobic004G263900 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic001G512900 Sobic001G512900 Sobic010G071200--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic001G424500--Sobic009G036900 Sobic001G424500--Sobic009G034400 Sobic001G127400 Sobic001G127400 Sobic001G424500--Sobic001G127400 Sobic003G101300 Sobic003G101300 Sobic001G424500--Sobic003G101300 Sobic001G424500--Sobic003G024800 Sobic007G038800 Sobic007G038800 Sobic001G424500--Sobic007G038800 Sobic001G424500--Sobic004G122000 Sobic001G424500--Sobic002G068300 Sobic002G121000 Sobic002G121000 Sobic001G424500--Sobic002G121000
Octagon: transcription factors


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