Gene annotation
Transcriptome id Sobic.009G034400.2,Sobic.009G034400.1
Synonym Sb09g002930
Functional annotation OsFBX48 - F-box domain containing protein, expressed
UniProt C5YZK2 , A0A1Z5R1R6
Pfam PF12937
Panther DB PTHR24006 PTHR24006:SF122
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G05460 : RNI-like superfamily protein
RAP-DB (Rice) LOC_Os02g21240.1 : OsFBX48 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038132 , Zm00025a055333
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G034400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
2 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
3 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
4 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
5 Sobic.010G228600 LSM domain containing protein, expressed -
6 Sobic.001G424500 mannose-1-phosphate guanyltransferase, putative, expressed K00966: mannose-1-phosphate guanylyltransferase
7 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.002G179500 holocarboxylase synthetase, putative, expressed -
9 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
10 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
11 Sobic.008G142700 expressed protein -
12 Sobic.001G127400 yippee zinc-binding protein, putative, expressed -
13 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
14 Sobic.003G420700 expressed protein -
15 Sobic.003G101300 expressed protein -
16 Sobic.007G038800 expressed protein -
17 Sobic.001G350501 - K11253: histone H3
18 Sobic.010G154150 - -
19 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
20 Sobic.003G074000 expressed protein K12593: MPHOSPH6, M-phase phosphoprotein 6, animal type


Gene co-expression network
sample Sobic009G034400 Sobic009G034400 Sobic009G036900 Sobic009G036900 Sobic009G034400--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic009G034400--Sobic003G024800 Sobic004G122000 Sobic004G122000 Sobic009G034400--Sobic004G122000 Sobic010G071200 Sobic010G071200 Sobic009G034400--Sobic010G071200 Sobic010G228600 Sobic010G228600 Sobic009G034400--Sobic010G228600 Sobic001G424500 Sobic001G424500 Sobic009G034400--Sobic001G424500 Sobic006G257900 Sobic006G257900 Sobic009G034400--Sobic006G257900 Sobic002G179500 Sobic002G179500 Sobic009G034400--Sobic002G179500 Sobic001G309100 Sobic001G309100 Sobic009G034400--Sobic001G309100 Sobic002G068300 Sobic002G068300 Sobic009G036900--Sobic002G068300 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic009G036900--Sobic003G024800 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic001G529000 Sobic001G529000 Sobic009G036900--Sobic001G529000 Sobic009G036900--Sobic010G071200 Sobic009G036900--Sobic001G424500 Sobic003G024800--Sobic009G036900 Sobic004G349100 Sobic004G349100 Sobic003G024800--Sobic004G349100 Sobic003G024800--Sobic001G309100 Sobic003G024800--Sobic009G034400 Sobic001G350501 Sobic001G350501 Sobic003G024800--Sobic001G350501 Sobic007G063200 Sobic007G063200 Sobic003G024800--Sobic007G063200 Sobic003G024800--Sobic010G071200 Sobic008G142700 Sobic008G142700 Sobic003G024800--Sobic008G142700 Sobic003G024800--Sobic010G228600 Sobic004G122000--Sobic009G034400 Sobic004G048700 Sobic004G048700 Sobic004G122000--Sobic004G048700 Sobic004G122000--Sobic009G036900 Sobic002G176400 Sobic002G176400 Sobic004G122000--Sobic002G176400 Sobic003G416600 Sobic003G416600 Sobic004G122000--Sobic003G416600 Sobic001G036700 Sobic001G036700 Sobic004G122000--Sobic001G036700 Sobic008G108500 Sobic008G108500 Sobic004G122000--Sobic008G108500 Sobic007G192100 Sobic007G192100 Sobic004G122000--Sobic007G192100 Sobic001G285300 Sobic001G285300 Sobic004G122000--Sobic001G285300 Sobic010G055500 Sobic010G055500 Sobic010G071200--Sobic010G055500 Sobic001G149700 Sobic001G149700 Sobic010G071200--Sobic001G149700 Sobic004G231400 Sobic004G231400 Sobic010G071200--Sobic004G231400 Sobic004G263900 Sobic004G263900 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic001G512900 Sobic001G512900 Sobic010G071200--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic010G228600--Sobic009G036900 Sobic010G228600--Sobic002G068300 Sobic001G056700 Sobic001G056700 Sobic010G228600--Sobic001G056700 Sobic001G471900 Sobic001G471900 Sobic010G228600--Sobic001G471900 Sobic010G144400 Sobic010G144400 Sobic010G228600--Sobic010G144400 Sobic010G228600--Sobic010G071200 Sobic010G228600--Sobic009G034400 Sobic010G228600--Sobic001G149700 Sobic004G164500 Sobic004G164500 Sobic010G228600--Sobic004G164500 Sobic001G424500--Sobic009G036900 Sobic001G424500--Sobic009G034400 Sobic001G127400 Sobic001G127400 Sobic001G424500--Sobic001G127400 Sobic003G101300 Sobic003G101300 Sobic001G424500--Sobic003G101300 Sobic001G424500--Sobic003G024800 Sobic007G038800 Sobic007G038800 Sobic001G424500--Sobic007G038800 Sobic001G424500--Sobic004G122000 Sobic001G424500--Sobic002G068300 Sobic002G121000 Sobic002G121000 Sobic001G424500--Sobic002G121000 Sobic006G257900--Sobic010G071200 Sobic006G257900--Sobic001G149700 Sobic006G257900--Sobic001G478300 Sobic010G154150 Sobic010G154150 Sobic006G257900--Sobic010G154150 Sobic006G257900--Sobic007G063200 Sobic006G257900--Sobic004G231400 Sobic006G257900--Sobic010G055500 Sobic004G188300 Sobic004G188300 Sobic006G257900--Sobic004G188300 Sobic006G257900--Sobic004G164500 Sobic002G179500--Sobic010G071200 Sobic002G179500--Sobic009G034400 Sobic008G073000 Sobic008G073000 Sobic002G179500--Sobic008G073000 Sobic002G179500--Sobic010G055500 Sobic008G101800 Sobic008G101800 Sobic002G179500--Sobic008G101800 Sobic010G174800 Sobic010G174800 Sobic002G179500--Sobic010G174800 Sobic002G179500--Sobic004G231400 Sobic002G179500--Sobic004G263900 Sobic002G179500--Sobic006G257900 Sobic001G038100 Sobic001G038100 Sobic001G309100--Sobic001G038100 Sobic001G309100--Sobic003G024800 Sobic001G309100--Sobic003G101300 Sobic003G189900 Sobic003G189900 Sobic001G309100--Sobic003G189900 Sobic001G390500 Sobic001G390500 Sobic001G309100--Sobic001G390500 Sobic001G309100--Sobic010G071200 Sobic003G437500 Sobic003G437500 Sobic001G309100--Sobic003G437500 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100
Octagon: transcription factors


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