Gene annotation
Transcriptome id Sobic.002G179500.1
Synonym Sb02g022820
Functional annotation holocarboxylase synthetase, putative, expressed
UniProt C5XAM7
Pfam -
Panther DB PTHR33675 PTHR33675:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G09830 : Uncharacterised conserved protein UCP009193
RAP-DB (Rice) LOC_Os09g19640.1 : holocarboxylase synthetase, putative, expressed
MaizeGDB (Corn) Zm00025a058224 , Zm00025a046646 , Zm00025a013805
Brachypodium KQJ89940
Barley HORVU5Hr1G056860.2 , HORVU5Hr1G056860.1
Wheat TraesCS5A02G195600 , TraesCS5D02G195400 , TraesCS5B02G187800
Populus -


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cDNA sequences
Sobic.002G179500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
2 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
3 Sobic.008G073000 expressed protein -
4 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
5 Sobic.008G101800 expressed protein -
6 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
7 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
8 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
9 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
10 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
11 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
12 Sobic.001G512900 heat shock protein DnaJ, putative, expressed K09537: DnaJ homolog subfamily C member 17
13 Sobic.002G045400 MBTB13 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.003G074000 expressed protein K12593: MPHOSPH6, M-phase phosphoprotein 6, animal type
15 Sobic.002G276900 transcription initiation factor IIB, putative, expressed K03124: TFIIB, GTF2B, SUA7, transcription initiation factor TFIIB
16 Sobic.004G188300 regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS2-11 - C2H2 zinc finger protein, expressed -
17 Sobic.003G101300 expressed protein -
18 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
19 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
20 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit


Gene co-expression network
sample Sobic002G179500 Sobic002G179500 Sobic010G071200 Sobic010G071200 Sobic002G179500--Sobic010G071200 Sobic009G034400 Sobic009G034400 Sobic002G179500--Sobic009G034400 Sobic008G073000 Sobic008G073000 Sobic002G179500--Sobic008G073000 Sobic010G055500 Sobic010G055500 Sobic002G179500--Sobic010G055500 Sobic008G101800 Sobic008G101800 Sobic002G179500--Sobic008G101800 Sobic010G174800 Sobic010G174800 Sobic002G179500--Sobic010G174800 Sobic004G231400 Sobic004G231400 Sobic002G179500--Sobic004G231400 Sobic004G263900 Sobic004G263900 Sobic002G179500--Sobic004G263900 Sobic006G257900 Sobic006G257900 Sobic002G179500--Sobic006G257900 Sobic010G071200--Sobic010G055500 Sobic001G149700 Sobic001G149700 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic010G071200--Sobic004G263900 Sobic008G142700 Sobic008G142700 Sobic010G071200--Sobic008G142700 Sobic001G512900 Sobic001G512900 Sobic010G071200--Sobic001G512900 Sobic001G478300 Sobic001G478300 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic009G036900 Sobic009G036900 Sobic009G034400--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic009G034400--Sobic003G024800 Sobic004G122000 Sobic004G122000 Sobic009G034400--Sobic004G122000 Sobic009G034400--Sobic010G071200 Sobic010G228600 Sobic010G228600 Sobic009G034400--Sobic010G228600 Sobic001G424500 Sobic001G424500 Sobic009G034400--Sobic001G424500 Sobic009G034400--Sobic006G257900 Sobic009G034400--Sobic002G179500 Sobic001G309100 Sobic001G309100 Sobic009G034400--Sobic001G309100 Sobic005G030300 Sobic005G030300 Sobic008G073000--Sobic005G030300 Sobic002G045400 Sobic002G045400 Sobic008G073000--Sobic002G045400 Sobic002G095700 Sobic002G095700 Sobic008G073000--Sobic002G095700 Sobic008G073000--Sobic008G101800 Sobic001G202266 Sobic001G202266 Sobic008G073000--Sobic001G202266 Sobic006G278200 Sobic006G278200 Sobic008G073000--Sobic006G278200 Sobic008G165100 Sobic008G165100 Sobic008G073000--Sobic008G165100 Sobic008G073000--Sobic010G174800 Sobic002G067800 Sobic002G067800 Sobic008G073000--Sobic002G067800 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic010G055500--Sobic001G149700 Sobic010G055500--Sobic004G231400 Sobic010G055500--Sobic001G512900 Sobic006G109300 Sobic006G109300 Sobic010G055500--Sobic006G109300 Sobic001G390500 Sobic001G390500 Sobic010G055500--Sobic001G390500 Sobic010G055500--Sobic008G142700 Sobic004G150400 Sobic004G150400 Sobic010G055500--Sobic004G150400 Sobic002G001600 Sobic002G001600 Sobic008G101800--Sobic002G001600 Sobic008G101800--Sobic008G073000 Sobic001G222300 Sobic001G222300 Sobic008G101800--Sobic001G222300 Sobic001G206100 Sobic001G206100 Sobic008G101800--Sobic001G206100 Sobic005G162600 Sobic005G162600 Sobic008G101800--Sobic005G162600 Sobic008G116500 Sobic008G116500 Sobic008G101800--Sobic008G116500 Sobic004G332300 Sobic004G332300 Sobic008G101800--Sobic004G332300 Sobic007G185900 Sobic007G185900 Sobic008G101800--Sobic007G185900 Sobic008G101800--Sobic002G045400 Sobic003G248500 Sobic003G248500 Sobic010G174800--Sobic003G248500 Sobic006G128800 Sobic006G128800 Sobic010G174800--Sobic006G128800 Sobic003G185200 Sobic003G185200 Sobic010G174800--Sobic003G185200 Sobic003G359300 Sobic003G359300 Sobic010G174800--Sobic003G359300 Sobic006G130200 Sobic006G130200 Sobic010G174800--Sobic006G130200 Sobic003G336800 Sobic003G336800 Sobic010G174800--Sobic003G336800 Sobic010G174800--Sobic004G263900 Sobic010G174800--Sobic001G390500 Sobic001G028400 Sobic001G028400 Sobic010G174800--Sobic001G028400 Sobic004G231400--Sobic010G055500 Sobic004G231400--Sobic010G071200 Sobic004G231400--Sobic001G478300 Sobic004G231400--Sobic001G149700 Sobic004G274700 Sobic004G274700 Sobic004G231400--Sobic004G274700 Sobic006G088100 Sobic006G088100 Sobic004G231400--Sobic006G088100 Sobic004G231400--Sobic006G257900 Sobic004G231400--Sobic004G150400 Sobic006G209500 Sobic006G209500 Sobic004G231400--Sobic006G209500 Sobic004G263900--Sobic010G055500 Sobic004G263900--Sobic010G071200 Sobic001G056200 Sobic001G056200 Sobic004G263900--Sobic001G056200 Sobic004G263900--Sobic003G359300 Sobic008G174300 Sobic008G174300 Sobic004G263900--Sobic008G174300 Sobic007G063200 Sobic007G063200 Sobic004G263900--Sobic007G063200 Sobic010G260500 Sobic010G260500 Sobic004G263900--Sobic010G260500 Sobic004G263900--Sobic001G028400 Sobic002G084300 Sobic002G084300 Sobic004G263900--Sobic002G084300 Sobic006G257900--Sobic010G071200 Sobic006G257900--Sobic001G149700 Sobic006G257900--Sobic001G478300 Sobic010G154150 Sobic010G154150 Sobic006G257900--Sobic010G154150 Sobic006G257900--Sobic007G063200 Sobic006G257900--Sobic004G231400 Sobic006G257900--Sobic010G055500 Sobic004G188300 Sobic004G188300 Sobic006G257900--Sobic004G188300 Sobic004G164500 Sobic004G164500 Sobic006G257900--Sobic004G164500
Octagon: transcription factors


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