Gene annotation
Transcriptome id Sobic.001G350501.1
Synonym -
Functional annotation -
UniProt A0A1Z5S992
Pfam PF00125
Panther DB PTHR11426
NCBI CDD KOG1745; Histones H3 and H4
KEGG Orthology K11253; histone H3
Gene Ontology GO:0003677; DNA binding GO:0000786nucleosome


Orthologs (automatic annotation)
TAIR AT4G40030 : Histone superfamily protein
RAP-DB (Rice) LOC_Os03g27310.2 : histone H3, putative, expressed
MaizeGDB (Corn) Zm00025a011166 , Zm00025a002729 , Zm00025a020776
Brachypodium KQJ82897
Barley HORVU2Hr1G079550.2 , HORVU2Hr1G079550.1 , HORVU2Hr1G079560.3 , HORVU2Hr1G079560.2 , HORVU2Hr1G079560.7 , HORVU2Hr1G079560.6 , HORVU2Hr1G079560.5 , HORVU2Hr1G079560.4
Wheat TraesCS2D02G316700 , TraesCS2B02G337200 , TraesCS2A02G318900
Populus PNT28035 , PNT28037 , PNT28036


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G024800 CGMC_GSK.2 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K14502: protein brassinosteroid insensitive 2
2 Sobic.004G349100 SNARE domain containing protein, putative, expressed K08504: blocked early in transport 1
3 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
4 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
5 Sobic.008G142700 expressed protein -
6 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
7 Sobic.003G420700 expressed protein -
8 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
9 Sobic.007G063200 tentative name(PubMedID : 31536532)@core histone H2A/H2B/H3/H4, putative, expressed K08066: NFYC, nuclear transcription factor Y, gamma
10 Sobic.007G226100 14-3-3 protein, putative, expressed K06630: 14-3-3 protein epsilon
11 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
12 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
13 Sobic.007G126200 mitosis protein dim1, putative, expressed K12859: TXNL4A, U5 snRNP protein, DIM1 family
14 Sobic.001G226100 L11 domain containing ribosomal protein, putative, expressed K02867: RP-L11, MRPL11, large subunit ribosomal protein L11
15 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
16 Sobic.001G009800 N-rich protein, putative, expressed -
17 Sobic.007G117100 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
18 Sobic.001G127400 yippee zinc-binding protein, putative, expressed -
19 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
20 Sobic.001G507400 PHD-finger domain containing protein, putative, expressed K11346: inhibitor of growth protein 4


Gene co-expression network
sample Sobic001G350501 Sobic001G350501 Sobic003G024800 Sobic003G024800 Sobic001G350501--Sobic003G024800 Sobic004G349100 Sobic004G349100 Sobic001G350501--Sobic004G349100 Sobic001G309100 Sobic001G309100 Sobic001G350501--Sobic001G309100 Sobic010G193800 Sobic010G193800 Sobic001G350501--Sobic010G193800 Sobic008G142700 Sobic008G142700 Sobic001G350501--Sobic008G142700 Sobic009G034400 Sobic009G034400 Sobic001G350501--Sobic009G034400 Sobic003G420700 Sobic003G420700 Sobic001G350501--Sobic003G420700 Sobic009G036900 Sobic009G036900 Sobic001G350501--Sobic009G036900 Sobic007G063200 Sobic007G063200 Sobic001G350501--Sobic007G063200 Sobic003G024800--Sobic009G036900 Sobic003G024800--Sobic004G349100 Sobic003G024800--Sobic001G309100 Sobic003G024800--Sobic009G034400 Sobic003G024800--Sobic001G350501 Sobic003G024800--Sobic007G063200 Sobic010G071200 Sobic010G071200 Sobic003G024800--Sobic010G071200 Sobic003G024800--Sobic008G142700 Sobic010G228600 Sobic010G228600 Sobic003G024800--Sobic010G228600 Sobic004G349100--Sobic003G024800 Sobic004G349100--Sobic001G350501 Sobic001G179000 Sobic001G179000 Sobic004G349100--Sobic001G179000 Sobic004G349100--Sobic009G034400 Sobic004G349100--Sobic001G309100 Sobic003G101300 Sobic003G101300 Sobic004G349100--Sobic003G101300 Sobic003G437500 Sobic003G437500 Sobic004G349100--Sobic003G437500 Sobic005G000800 Sobic005G000800 Sobic004G349100--Sobic005G000800 Sobic007G195400 Sobic007G195400 Sobic004G349100--Sobic007G195400 Sobic001G038100 Sobic001G038100 Sobic001G309100--Sobic001G038100 Sobic001G309100--Sobic003G024800 Sobic001G309100--Sobic003G101300 Sobic003G189900 Sobic003G189900 Sobic001G309100--Sobic003G189900 Sobic001G390500 Sobic001G390500 Sobic001G309100--Sobic001G390500 Sobic001G309100--Sobic010G071200 Sobic001G309100--Sobic003G437500 Sobic001G309100--Sobic001G350501 Sobic007G117100 Sobic007G117100 Sobic001G309100--Sobic007G117100 Sobic010G193800--Sobic003G420700 Sobic004G356900 Sobic004G356900 Sobic010G193800--Sobic004G356900 Sobic002G256300 Sobic002G256300 Sobic010G193800--Sobic002G256300 Sobic001G532100 Sobic001G532100 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic001G439600 Sobic001G439600 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950 Sobic008G142700--Sobic010G071200 Sobic001G512900 Sobic001G512900 Sobic008G142700--Sobic001G512900 Sobic010G055500 Sobic010G055500 Sobic008G142700--Sobic010G055500 Sobic001G149700 Sobic001G149700 Sobic008G142700--Sobic001G149700 Sobic008G142700--Sobic007G063200 Sobic003G350600 Sobic003G350600 Sobic008G142700--Sobic003G350600 Sobic006G109300 Sobic006G109300 Sobic008G142700--Sobic006G109300 Sobic008G142700--Sobic009G246950 Sobic001G478300 Sobic001G478300 Sobic008G142700--Sobic001G478300 Sobic009G034400--Sobic009G036900 Sobic009G034400--Sobic003G024800 Sobic004G122000 Sobic004G122000 Sobic009G034400--Sobic004G122000 Sobic009G034400--Sobic010G071200 Sobic009G034400--Sobic010G228600 Sobic001G424500 Sobic001G424500 Sobic009G034400--Sobic001G424500 Sobic006G257900 Sobic006G257900 Sobic009G034400--Sobic006G257900 Sobic002G179500 Sobic002G179500 Sobic009G034400--Sobic002G179500 Sobic009G034400--Sobic001G309100 Sobic003G420700--Sobic010G193800 Sobic003G420700--Sobic001G038100 Sobic002G077900 Sobic002G077900 Sobic003G420700--Sobic002G077900 Sobic003G420700--Sobic001G309100 Sobic001G285300 Sobic001G285300 Sobic003G420700--Sobic001G285300 Sobic003G420700--Sobic007G117100 Sobic002G014700 Sobic002G014700 Sobic003G420700--Sobic002G014700 Sobic003G420700--Sobic009G036900 Sobic003G420700--Sobic003G024800 Sobic002G068300 Sobic002G068300 Sobic009G036900--Sobic002G068300 Sobic009G036900--Sobic009G034400 Sobic006G256500 Sobic006G256500 Sobic009G036900--Sobic006G256500 Sobic009G036900--Sobic003G024800 Sobic009G036900--Sobic010G228600 Sobic010G039800 Sobic010G039800 Sobic009G036900--Sobic010G039800 Sobic001G529000 Sobic001G529000 Sobic009G036900--Sobic001G529000 Sobic009G036900--Sobic010G071200 Sobic009G036900--Sobic001G424500 Sobic004G263900 Sobic004G263900 Sobic007G063200--Sobic004G263900 Sobic001G028400 Sobic001G028400 Sobic007G063200--Sobic001G028400 Sobic003G359300 Sobic003G359300 Sobic007G063200--Sobic003G359300 Sobic010G033400 Sobic010G033400 Sobic007G063200--Sobic010G033400 Sobic007G063200--Sobic010G071200 Sobic003G026300 Sobic003G026300 Sobic007G063200--Sobic003G026300 Sobic007G063200--Sobic010G055500 Sobic007G063200--Sobic006G257900 Sobic007G063200--Sobic008G142700
Octagon: transcription factors


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