Gene annotation
Transcriptome id Sobic.002G176400.1
Synonym Sb02g022530
Functional annotation ubiquitin domain-containing protein 2, putative, expressed
UniProt C5XAJ3
Pfam PF16455
Panther DB PTHR13609 PTHR13609:SF12
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53400 : Ubiquitin domain-containing protein
RAP-DB (Rice) LOC_Os09g17620.1 : ubiquitin domain-containing protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a027706 , Zm00025a013789
Brachypodium -
Barley HORVU5Hr1G041520.3 , HORVU5Hr1G041520.2 , HORVU5Hr1G041520.1
Wheat TraesCS5D02G191600 , TraesCS5B02G184800
Populus -


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cDNA sequences
Sobic.002G176400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
2 Sobic.008G108500 histone deacetylase 6, putative, expressed -
3 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
4 Sobic.007G192100 emp24/gp25L/p24 family protein, putative, expressed -
5 Sobic.003G189900 expressed protein -
6 Sobic.009G086200 ubiquitin-conjugating enzyme E2 O, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
7 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
8 Sobic.009G034400 OsFBX48 - F-box domain containing protein, expressed -
9 Sobic.007G038800 expressed protein -
10 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
11 Sobic.001G402600 expressed protein -
12 Sobic.004G012800 DNA-directed RNA polymerase II subunit RPB4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
13 Sobic.001G038100 protein kinase PKN/PRK1, effector, putative, expressed -
14 Sobic.001G285300 expressed protein -
15 Sobic.001G309100 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein
16 Sobic.009G036900 RNA recognition motif containing protein, putative, expressed K12876: RBM8A, RNA-binding protein 8A
17 Sobic.002G077900 eukaryotic translation initiation factor 3 subunit E, putative, expressed K03250: EIF3E, translation initiation factor 3 subunit E
18 Sobic.004G048700 SCO1 protein homolog, mitochondrial precursor, putative, expressed K07152: protein SCO1
19 Sobic.003G354100 expressed protein -
20 Sobic.006G002500 basic salivary proline-rich protein 2 precursor, putative, expressed -


Gene co-expression network
sample Sobic002G176400 Sobic002G176400 Sobic001G036700 Sobic001G036700 Sobic002G176400--Sobic001G036700 Sobic008G108500 Sobic008G108500 Sobic002G176400--Sobic008G108500 Sobic004G122000 Sobic004G122000 Sobic002G176400--Sobic004G122000 Sobic007G192100 Sobic007G192100 Sobic002G176400--Sobic007G192100 Sobic003G189900 Sobic003G189900 Sobic002G176400--Sobic003G189900 Sobic009G086200 Sobic009G086200 Sobic002G176400--Sobic009G086200 Sobic001G126200 Sobic001G126200 Sobic002G176400--Sobic001G126200 Sobic009G034400 Sobic009G034400 Sobic002G176400--Sobic009G034400 Sobic007G038800 Sobic007G038800 Sobic002G176400--Sobic007G038800 Sobic001G532100 Sobic001G532100 Sobic001G036700--Sobic001G532100 Sobic001G036700--Sobic002G176400 Sobic001G036700--Sobic007G192100 Sobic001G285300 Sobic001G285300 Sobic001G036700--Sobic001G285300 Sobic006G094600 Sobic006G094600 Sobic001G036700--Sobic006G094600 Sobic001G036700--Sobic001G126200 Sobic003G131300 Sobic003G131300 Sobic001G036700--Sobic003G131300 Sobic003G420700 Sobic003G420700 Sobic001G036700--Sobic003G420700 Sobic001G036700--Sobic009G086200 Sobic008G108500--Sobic007G192100 Sobic008G108500--Sobic002G176400 Sobic008G108500--Sobic003G189900 Sobic002G401700 Sobic002G401700 Sobic008G108500--Sobic002G401700 Sobic008G108500--Sobic001G036700 Sobic008G108500--Sobic007G038800 Sobic008G108500--Sobic004G122000 Sobic007G117800 Sobic007G117800 Sobic008G108500--Sobic007G117800 Sobic008G108500--Sobic009G086200 Sobic004G122000--Sobic009G034400 Sobic004G048700 Sobic004G048700 Sobic004G122000--Sobic004G048700 Sobic009G036900 Sobic009G036900 Sobic004G122000--Sobic009G036900 Sobic004G122000--Sobic002G176400 Sobic003G416600 Sobic003G416600 Sobic004G122000--Sobic003G416600 Sobic004G122000--Sobic001G036700 Sobic004G122000--Sobic008G108500 Sobic004G122000--Sobic007G192100 Sobic004G122000--Sobic001G285300 Sobic007G192100--Sobic008G108500 Sobic007G192100--Sobic001G036700 Sobic001G402600 Sobic001G402600 Sobic007G192100--Sobic001G402600 Sobic007G192100--Sobic002G176400 Sobic007G192100--Sobic001G126200 Sobic007G192100--Sobic007G038800 Sobic001G392800 Sobic001G392800 Sobic007G192100--Sobic001G392800 Sobic002G399500 Sobic002G399500 Sobic007G192100--Sobic002G399500 Sobic007G192100--Sobic007G117800 Sobic001G390500 Sobic001G390500 Sobic003G189900--Sobic001G390500 Sobic001G309100 Sobic001G309100 Sobic003G189900--Sobic001G309100 Sobic003G189900--Sobic008G108500 Sobic003G189900--Sobic007G038800 Sobic003G189900--Sobic002G176400 Sobic003G311000 Sobic003G311000 Sobic003G189900--Sobic003G311000 Sobic001G083600 Sobic001G083600 Sobic003G189900--Sobic001G083600 Sobic006G002500 Sobic006G002500 Sobic003G189900--Sobic006G002500 Sobic010G071200 Sobic010G071200 Sobic003G189900--Sobic010G071200 Sobic009G086200--Sobic002G176400 Sobic009G086200--Sobic001G036700 Sobic009G086200--Sobic001G285300 Sobic009G086200--Sobic001G532100 Sobic003G043400 Sobic003G043400 Sobic009G086200--Sobic003G043400 Sobic009G086200--Sobic007G192100 Sobic009G086200--Sobic004G048700 Sobic009G086200--Sobic007G038800 Sobic009G086200--Sobic008G108500 Sobic006G222400 Sobic006G222400 Sobic001G126200--Sobic006G222400 Sobic004G224800 Sobic004G224800 Sobic001G126200--Sobic004G224800 Sobic001G126200--Sobic006G094600 Sobic001G126200--Sobic003G131300 Sobic001G126200--Sobic001G285300 Sobic010G238700 Sobic010G238700 Sobic001G126200--Sobic010G238700 Sobic001G367000 Sobic001G367000 Sobic001G126200--Sobic001G367000 Sobic002G044000 Sobic002G044000 Sobic001G126200--Sobic002G044000 Sobic001G126200--Sobic007G192100 Sobic009G034400--Sobic009G036900 Sobic003G024800 Sobic003G024800 Sobic009G034400--Sobic003G024800 Sobic009G034400--Sobic004G122000 Sobic009G034400--Sobic010G071200 Sobic010G228600 Sobic010G228600 Sobic009G034400--Sobic010G228600 Sobic001G424500 Sobic001G424500 Sobic009G034400--Sobic001G424500 Sobic006G257900 Sobic006G257900 Sobic009G034400--Sobic006G257900 Sobic002G179500 Sobic002G179500 Sobic009G034400--Sobic002G179500 Sobic009G034400--Sobic001G309100 Sobic007G038800--Sobic009G036900 Sobic002G068300 Sobic002G068300 Sobic007G038800--Sobic002G068300 Sobic007G038800--Sobic003G189900 Sobic007G038800--Sobic007G192100 Sobic007G038800--Sobic009G034400 Sobic006G099800 Sobic006G099800 Sobic007G038800--Sobic006G099800 Sobic009G252800 Sobic009G252800 Sobic007G038800--Sobic009G252800 Sobic007G038800--Sobic008G108500 Sobic007G038800--Sobic001G126200
Octagon: transcription factors


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