Gene annotation
Transcriptome id Sobic.001G281700.1
Synonym Sb01g027700
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5WQL8
Pfam PF13920
Panther DB PTHR12313 PTHR12313:SF15
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology K10666; E3 ubiquitin-protein ligase RNF5
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G23780 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g61420.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003580
Brachypodium KQJ96225
Barley HORVU1Hr1G051370.9 , HORVU1Hr1G051370.8 , HORVU1Hr1G051370.7 , HORVU1Hr1G051370.6 , HORVU1Hr1G051370.5 , HORVU1Hr1G051370.4 , HORVU1Hr1G051370.3 , HORVU1Hr1G051370.1 , HORVU1Hr1G051370.2
Wheat TraesCS1D02G201500 , TraesCS1B02G212700
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G281700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G206000 acyltransferase, putative, expressed K00655: 1-acyl-sn-glycerol-3-phosphate acyltransferase
2 Sobic.002G088700 domain of unknown function domain containing protein, expressed -
3 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
4 Sobic.007G115900 SAM domain family protein, expressed -
5 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
6 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
7 Sobic.006G257900 ubiquitin-conjugating enzyme, putative, expressed K06689: UBE2D, UBC4, ubiquitin-conjugating enzyme E2 D
8 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta
9 Sobic.006G254600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
10 Sobic.010G228600 LSM domain containing protein, expressed -
11 Sobic.001G522900 expressed protein -
12 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
13 Sobic.003G137400 OsRCI2-6 - Hydrophobic protein LTI6B, expressed -
14 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
15 Sobic.003G389800 nucleotide-sugar transporter family protein, putative, expressed -
16 Sobic.004G122000 protein of unknown function DUF502 domain containing protein, expressed -
17 Sobic.007G177500 thaumatin, putative, expressed -
18 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
19 Sobic.009G065000 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsIAA15 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
20 Sobic.003G317200 vacuolar protein sorting-associated protein 28 homolog 2, putative, expressed K12184: ESCRT-I complex subunit VPS28


Gene co-expression network
sample Sobic001G281700 Sobic001G281700 Sobic001G206000 Sobic001G206000 Sobic001G281700--Sobic001G206000 Sobic002G088700 Sobic002G088700 Sobic001G281700--Sobic002G088700 Sobic001G149700 Sobic001G149700 Sobic001G281700--Sobic001G149700 Sobic007G115900 Sobic007G115900 Sobic001G281700--Sobic007G115900 Sobic010G071200 Sobic010G071200 Sobic001G281700--Sobic010G071200 Sobic010G055500 Sobic010G055500 Sobic001G281700--Sobic010G055500 Sobic006G257900 Sobic006G257900 Sobic001G281700--Sobic006G257900 Sobic009G032300 Sobic009G032300 Sobic001G281700--Sobic009G032300 Sobic006G254600 Sobic006G254600 Sobic001G281700--Sobic006G254600 Sobic003G116700 Sobic003G116700 Sobic001G206000--Sobic003G116700 Sobic001G206000--Sobic001G149700 Sobic009G065000 Sobic009G065000 Sobic001G206000--Sobic009G065000 Sobic001G206000--Sobic010G055500 Sobic001G206000--Sobic001G281700 Sobic004G231400 Sobic004G231400 Sobic001G206000--Sobic004G231400 Sobic003G317200 Sobic003G317200 Sobic001G206000--Sobic003G317200 Sobic001G206000--Sobic010G071200 Sobic007G079700 Sobic007G079700 Sobic001G206000--Sobic007G079700 Sobic002G088700--Sobic001G281700 Sobic004G083200 Sobic004G083200 Sobic002G088700--Sobic004G083200 Sobic002G088700--Sobic001G206000 Sobic001G390500 Sobic001G390500 Sobic002G088700--Sobic001G390500 Sobic004G077000 Sobic004G077000 Sobic002G088700--Sobic004G077000 Sobic004G152000 Sobic004G152000 Sobic002G088700--Sobic004G152000 Sobic003G248500 Sobic003G248500 Sobic002G088700--Sobic003G248500 Sobic002G088700--Sobic007G115900 Sobic003G024800 Sobic003G024800 Sobic002G088700--Sobic003G024800 Sobic001G149700--Sobic010G071200 Sobic001G149700--Sobic010G055500 Sobic001G149700--Sobic004G231400 Sobic001G478300 Sobic001G478300 Sobic001G149700--Sobic001G478300 Sobic001G149700--Sobic006G257900 Sobic008G142700 Sobic008G142700 Sobic001G149700--Sobic008G142700 Sobic003G273100 Sobic003G273100 Sobic001G149700--Sobic003G273100 Sobic001G076000 Sobic001G076000 Sobic001G149700--Sobic001G076000 Sobic001G512900 Sobic001G512900 Sobic001G149700--Sobic001G512900 Sobic004G316800 Sobic004G316800 Sobic007G115900--Sobic004G316800 Sobic001G522900 Sobic001G522900 Sobic007G115900--Sobic001G522900 Sobic006G092800 Sobic006G092800 Sobic007G115900--Sobic006G092800 Sobic001G043900 Sobic001G043900 Sobic007G115900--Sobic001G043900 Sobic007G115900--Sobic009G032300 Sobic006G258900 Sobic006G258900 Sobic007G115900--Sobic006G258900 Sobic002G378200 Sobic002G378200 Sobic007G115900--Sobic002G378200 Sobic004G007300 Sobic004G007300 Sobic007G115900--Sobic004G007300 Sobic003G211700 Sobic003G211700 Sobic007G115900--Sobic003G211700 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic004G263900 Sobic004G263900 Sobic010G071200--Sobic004G263900 Sobic010G071200--Sobic008G142700 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic010G055500--Sobic010G071200 Sobic010G055500--Sobic004G263900 Sobic010G055500--Sobic001G149700 Sobic010G055500--Sobic004G231400 Sobic010G055500--Sobic001G512900 Sobic006G109300 Sobic006G109300 Sobic010G055500--Sobic006G109300 Sobic010G055500--Sobic001G390500 Sobic010G055500--Sobic008G142700 Sobic004G150400 Sobic004G150400 Sobic010G055500--Sobic004G150400 Sobic006G257900--Sobic010G071200 Sobic006G257900--Sobic001G149700 Sobic006G257900--Sobic001G478300 Sobic010G154150 Sobic010G154150 Sobic006G257900--Sobic010G154150 Sobic007G063200 Sobic007G063200 Sobic006G257900--Sobic007G063200 Sobic006G257900--Sobic004G231400 Sobic006G257900--Sobic010G055500 Sobic004G188300 Sobic004G188300 Sobic006G257900--Sobic004G188300 Sobic004G164500 Sobic004G164500 Sobic006G257900--Sobic004G164500 Sobic010G264400 Sobic010G264400 Sobic009G032300--Sobic010G264400 Sobic006G130200 Sobic006G130200 Sobic009G032300--Sobic006G130200 Sobic009G032300--Sobic006G092800 Sobic010G174800 Sobic010G174800 Sobic009G032300--Sobic010G174800 Sobic006G128800 Sobic006G128800 Sobic009G032300--Sobic006G128800 Sobic002G197100 Sobic002G197100 Sobic009G032300--Sobic002G197100 Sobic009G032300--Sobic007G115900 Sobic001G221100 Sobic001G221100 Sobic009G032300--Sobic001G221100 Sobic007G191100 Sobic007G191100 Sobic009G032300--Sobic007G191100 Sobic008G165000 Sobic008G165000 Sobic006G254600--Sobic008G165000 Sobic006G254600--Sobic006G092800 Sobic006G254600--Sobic002G378200 Sobic008G192000 Sobic008G192000 Sobic006G254600--Sobic008G192000 Sobic002G084300 Sobic002G084300 Sobic006G254600--Sobic002G084300 Sobic006G254600--Sobic001G522900 Sobic006G254600--Sobic004G231400 Sobic006G254600--Sobic010G071200 Sobic001G085500 Sobic001G085500 Sobic006G254600--Sobic001G085500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.