Gene annotation
Transcriptome id Sobic.006G254600.1
Synonym Sb06g031850
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5Y9Y4
Pfam PF00642
Panther DB PTHR33400 PTHR33400:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19860 : Zinc finger C-x8-C-x5-C-x3-H type family protein
RAP-DB (Rice) LOC_Os04g56750.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a009420 , Zm00025a057304
Brachypodium KQJ85138
Barley -
Wheat TraesCS2B02G520300 , TraesCS2A02G492200 , TraesCS2D02G492400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G254600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G165000 LSD1 zinc finger domain containing protein, expressed -
2 Sobic.006G092800 proteasome subunit, putative, expressed K03036: PSMD11, 26S proteasome regulatory subunit N6
3 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
4 Sobic.008G192000 yippee zinc-binding protein, putative, expressed -
5 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
6 Sobic.001G522900 expressed protein -
7 Sobic.004G231400 OsAPRL3 adenosine 5\'-phosphosulfate reductase-like OsAPRL3, expressed -
8 Sobic.010G071200 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@ubiquitin-conjugating enzyme, putative, expressed K04554: UBE2J2, NCUBE2, ubiquitin-conjugating enzyme E2 J2
9 Sobic.001G085500 NLI interacting factor-like phosphatase, putative, expressed -
10 Sobic.001G390500 SNF1-related protein kinase regulatory subunit beta-1, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
11 Sobic.004G263900 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
12 Sobic.006G088100 coiled-coil domain-containing protein 55, putative, expressed K13206: coiled-coil domain-containing protein 55
13 Sobic.001G478300 modifier of rudimentary protein, expressed K12185: ESCRT-I complex subunit VPS37
14 Sobic.010G055500 RNA-binding motif protein, putative, expressed K12872: RBM22, pre-mRNA-splicing factor RBM22/SLT11
15 Sobic.001G149700 vesicle transport v-SNARE protein, putative, expressed K08496: GOSR2, golgi SNAP receptor complex member 2
16 Sobic.001G083600 26S proteasome non-ATPase regulatory subunit 10, putative, expressed K06694: 26S proteasome non-ATPase regulatory subunit 10
17 Sobic.001G028400 domain of unknown function domain containing protein, expressed -
18 Sobic.001G056200 expressed protein -
19 Sobic.010G174800 OsPP2Ac-1 - Phosphatase 2A isoform 1 belonging to family 1, expressed K04382: serine/threonine-protein phosphatase 2A catalytic subunit
20 Sobic.009G032300 CGMC_GSK.6 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K03083: glycogen synthase kinase 3 beta


Gene co-expression network
sample Sobic006G254600 Sobic006G254600 Sobic008G165000 Sobic008G165000 Sobic006G254600--Sobic008G165000 Sobic006G092800 Sobic006G092800 Sobic006G254600--Sobic006G092800 Sobic002G378200 Sobic002G378200 Sobic006G254600--Sobic002G378200 Sobic008G192000 Sobic008G192000 Sobic006G254600--Sobic008G192000 Sobic002G084300 Sobic002G084300 Sobic006G254600--Sobic002G084300 Sobic001G522900 Sobic001G522900 Sobic006G254600--Sobic001G522900 Sobic004G231400 Sobic004G231400 Sobic006G254600--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic006G254600--Sobic010G071200 Sobic001G085500 Sobic001G085500 Sobic006G254600--Sobic001G085500 Sobic010G243400 Sobic010G243400 Sobic008G165000--Sobic010G243400 Sobic008G165000--Sobic006G254600 Sobic001G489700 Sobic001G489700 Sobic008G165000--Sobic001G489700 Sobic008G165000--Sobic002G378200 Sobic008G165000--Sobic001G085500 Sobic004G094300 Sobic004G094300 Sobic008G165000--Sobic004G094300 Sobic002G040700 Sobic002G040700 Sobic008G165000--Sobic002G040700 Sobic001G512400 Sobic001G512400 Sobic008G165000--Sobic001G512400 Sobic008G165000--Sobic001G522900 Sobic004G007300 Sobic004G007300 Sobic006G092800--Sobic004G007300 Sobic004G345700 Sobic004G345700 Sobic006G092800--Sobic004G345700 Sobic007G088900 Sobic007G088900 Sobic006G092800--Sobic007G088900 Sobic001G056200 Sobic001G056200 Sobic006G092800--Sobic001G056200 Sobic006G128800 Sobic006G128800 Sobic006G092800--Sobic006G128800 Sobic002G197100 Sobic002G197100 Sobic006G092800--Sobic002G197100 Sobic006G092800--Sobic006G254600 Sobic001G408700 Sobic001G408700 Sobic006G092800--Sobic001G408700 Sobic003G437500 Sobic003G437500 Sobic006G092800--Sobic003G437500 Sobic006G278700 Sobic006G278700 Sobic002G378200--Sobic006G278700 Sobic002G378200--Sobic004G345700 Sobic002G378200--Sobic002G084300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic008G192000--Sobic002G084300 Sobic008G192000--Sobic006G254600 Sobic008G192000--Sobic001G028400 Sobic006G175400 Sobic006G175400 Sobic008G192000--Sobic006G175400 Sobic009G198100 Sobic009G198100 Sobic008G192000--Sobic009G198100 Sobic001G390500 Sobic001G390500 Sobic008G192000--Sobic001G390500 Sobic010G033400 Sobic010G033400 Sobic008G192000--Sobic010G033400 Sobic007G205000 Sobic007G205000 Sobic008G192000--Sobic007G205000 Sobic001G512900 Sobic001G512900 Sobic008G192000--Sobic001G512900 Sobic002G084300--Sobic001G056200 Sobic004G263900 Sobic004G263900 Sobic002G084300--Sobic004G263900 Sobic008G174300 Sobic008G174300 Sobic002G084300--Sobic008G174300 Sobic002G084300--Sobic002G378200 Sobic002G084300--Sobic001G028400 Sobic002G084300--Sobic001G408700 Sobic002G084300--Sobic001G390500 Sobic003G081000 Sobic003G081000 Sobic002G084300--Sobic003G081000 Sobic002G084300--Sobic009G198100 Sobic007G115900 Sobic007G115900 Sobic001G522900--Sobic007G115900 Sobic001G054200 Sobic001G054200 Sobic001G522900--Sobic001G054200 Sobic004G072800 Sobic004G072800 Sobic001G522900--Sobic004G072800 Sobic001G522900--Sobic002G378200 Sobic001G522900--Sobic006G254600 Sobic006G258900 Sobic006G258900 Sobic001G522900--Sobic006G258900 Sobic001G522900--Sobic008G165000 Sobic007G118000 Sobic007G118000 Sobic001G522900--Sobic007G118000 Sobic003G071500 Sobic003G071500 Sobic001G522900--Sobic003G071500 Sobic010G055500 Sobic010G055500 Sobic004G231400--Sobic010G055500 Sobic004G231400--Sobic010G071200 Sobic001G478300 Sobic001G478300 Sobic004G231400--Sobic001G478300 Sobic001G149700 Sobic001G149700 Sobic004G231400--Sobic001G149700 Sobic004G274700 Sobic004G274700 Sobic004G231400--Sobic004G274700 Sobic006G088100 Sobic006G088100 Sobic004G231400--Sobic006G088100 Sobic006G257900 Sobic006G257900 Sobic004G231400--Sobic006G257900 Sobic004G150400 Sobic004G150400 Sobic004G231400--Sobic004G150400 Sobic006G209500 Sobic006G209500 Sobic004G231400--Sobic006G209500 Sobic010G071200--Sobic010G055500 Sobic010G071200--Sobic001G149700 Sobic010G071200--Sobic004G231400 Sobic010G071200--Sobic004G263900 Sobic008G142700 Sobic008G142700 Sobic010G071200--Sobic008G142700 Sobic010G071200--Sobic001G512900 Sobic010G071200--Sobic001G478300 Sobic010G071200--Sobic006G257900 Sobic001G083600 Sobic001G083600 Sobic010G071200--Sobic001G083600 Sobic001G085500--Sobic002G378200 Sobic001G085500--Sobic004G007300 Sobic001G085500--Sobic006G092800 Sobic004G298300 Sobic004G298300 Sobic001G085500--Sobic004G298300 Sobic009G032300 Sobic009G032300 Sobic001G085500--Sobic009G032300 Sobic001G127500 Sobic001G127500 Sobic001G085500--Sobic001G127500 Sobic001G085500--Sobic008G165000 Sobic001G085500--Sobic001G028400 Sobic004G034400 Sobic004G034400 Sobic001G085500--Sobic004G034400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.