Gene annotation
Transcriptome id Sobic.008G165000.1
Synonym LSD1
Functional annotation LSD1 zinc finger domain containing protein, expressed
UniProt A0A1B6PE69
Pfam PF06943
Panther DB PTHR31747 PTHR31747:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G20380 : LSD1 zinc finger family protein
RAP-DB (Rice) LOC_Os12g41700.1 : LSD1 zinc finger domain containing protein, expressed
MaizeGDB (Corn) Zm00025a025344
Brachypodium -
Barley -
Wheat TraesCS5D02G059500 , TraesCS5B02G054000 , TraesCS5A02G048900
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G165000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G243400 expressed protein -
2 Sobic.006G254600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
3 Sobic.001G489700 prenyltransferase, putative, expressed K02257: COX10, ctaB, heme o synthase
4 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
5 Sobic.001G085500 NLI interacting factor-like phosphatase, putative, expressed -
6 Sobic.004G094300 protein kinase domain containing protein, expressed K04424: ZAK, sterile alpha motif and leucine zipper containing kinase AZK
7 Sobic.002G040700 tetratricopeptide repeat, putative, expressed -
8 Sobic.001G512400 expressed protein -
9 Sobic.001G522900 expressed protein -
10 Sobic.001G421400 expressed protein -
11 Sobic.009G228700 expressed protein -
12 Sobic.001G313500 tobamovirus multiplication protein, putative, expressed -
13 Sobic.002G084300 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
14 Sobic.001G048700 TBC domain containing protein, expressed -
15 Sobic.008G173400 initiation factor 2 subunit family domain containing protein, expressed K03680: translation initiation factor eIF-2B subunit delta
16 Sobic.002G132300 Ser/Thr protein phosphatase family protein, putative, expressed K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase
17 Sobic.010G083700 formin-binding protein-related, putative, expressed K13220: WBP4, WW domain-binding protein 4
18 Sobic.003G007500 CK1_CaseinKinase_1.1 - CK1 includes the casein kinase 1 kinases, expressed -
19 Sobic.004G003401 - -
20 Sobic.009G224000 OsQSOXL1 quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed K10758: thiol oxidase


Gene co-expression network
sample Sobic008G165000 Sobic008G165000 Sobic010G243400 Sobic010G243400 Sobic008G165000--Sobic010G243400 Sobic006G254600 Sobic006G254600 Sobic008G165000--Sobic006G254600 Sobic001G489700 Sobic001G489700 Sobic008G165000--Sobic001G489700 Sobic002G378200 Sobic002G378200 Sobic008G165000--Sobic002G378200 Sobic001G085500 Sobic001G085500 Sobic008G165000--Sobic001G085500 Sobic004G094300 Sobic004G094300 Sobic008G165000--Sobic004G094300 Sobic002G040700 Sobic002G040700 Sobic008G165000--Sobic002G040700 Sobic001G512400 Sobic001G512400 Sobic008G165000--Sobic001G512400 Sobic001G522900 Sobic001G522900 Sobic008G165000--Sobic001G522900 Sobic010G243400--Sobic008G165000 Sobic007G056100 Sobic007G056100 Sobic010G243400--Sobic007G056100 Sobic010G261600 Sobic010G261600 Sobic010G243400--Sobic010G261600 Sobic003G243700 Sobic003G243700 Sobic010G243400--Sobic003G243700 Sobic009G041700 Sobic009G041700 Sobic010G243400--Sobic009G041700 Sobic009G224000 Sobic009G224000 Sobic010G243400--Sobic009G224000 Sobic004G003401 Sobic004G003401 Sobic010G243400--Sobic004G003401 Sobic008G173400 Sobic008G173400 Sobic010G243400--Sobic008G173400 Sobic001G421400 Sobic001G421400 Sobic010G243400--Sobic001G421400 Sobic006G254600--Sobic008G165000 Sobic006G092800 Sobic006G092800 Sobic006G254600--Sobic006G092800 Sobic006G254600--Sobic002G378200 Sobic008G192000 Sobic008G192000 Sobic006G254600--Sobic008G192000 Sobic002G084300 Sobic002G084300 Sobic006G254600--Sobic002G084300 Sobic006G254600--Sobic001G522900 Sobic004G231400 Sobic004G231400 Sobic006G254600--Sobic004G231400 Sobic010G071200 Sobic010G071200 Sobic006G254600--Sobic010G071200 Sobic006G254600--Sobic001G085500 Sobic001G489700--Sobic008G165000 Sobic001G489700--Sobic002G378200 Sobic001G047400 Sobic001G047400 Sobic001G489700--Sobic001G047400 Sobic001G307900 Sobic001G307900 Sobic001G489700--Sobic001G307900 Sobic004G010900 Sobic004G010900 Sobic001G489700--Sobic004G010900 Sobic009G257200 Sobic009G257200 Sobic001G489700--Sobic009G257200 Sobic006G250900 Sobic006G250900 Sobic001G489700--Sobic006G250900 Sobic001G489700--Sobic002G040700 Sobic002G281300 Sobic002G281300 Sobic001G489700--Sobic002G281300 Sobic006G278700 Sobic006G278700 Sobic002G378200--Sobic006G278700 Sobic004G345700 Sobic004G345700 Sobic002G378200--Sobic004G345700 Sobic002G378200--Sobic002G084300 Sobic004G007300 Sobic004G007300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic001G056200 Sobic001G056200 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic001G085500--Sobic002G378200 Sobic001G085500--Sobic004G007300 Sobic001G085500--Sobic006G092800 Sobic004G298300 Sobic004G298300 Sobic001G085500--Sobic004G298300 Sobic009G032300 Sobic009G032300 Sobic001G085500--Sobic009G032300 Sobic001G127500 Sobic001G127500 Sobic001G085500--Sobic001G127500 Sobic001G085500--Sobic008G165000 Sobic001G085500--Sobic001G028400 Sobic004G034400 Sobic004G034400 Sobic001G085500--Sobic004G034400 Sobic009G205200 Sobic009G205200 Sobic004G094300--Sobic009G205200 Sobic002G350300 Sobic002G350300 Sobic004G094300--Sobic002G350300 Sobic004G094300--Sobic008G165000 Sobic009G228700 Sobic009G228700 Sobic004G094300--Sobic009G228700 Sobic004G121100 Sobic004G121100 Sobic004G094300--Sobic004G121100 Sobic007G207400 Sobic007G207400 Sobic004G094300--Sobic007G207400 Sobic004G066200 Sobic004G066200 Sobic004G094300--Sobic004G066200 Sobic004G094300--Sobic010G243400 Sobic004G094300--Sobic004G003401 Sobic002G040700--Sobic001G512400 Sobic001G439600 Sobic001G439600 Sobic002G040700--Sobic001G439600 Sobic002G040700--Sobic008G165000 Sobic001G105500 Sobic001G105500 Sobic002G040700--Sobic001G105500 Sobic007G118000 Sobic007G118000 Sobic002G040700--Sobic007G118000 Sobic002G040700--Sobic004G010900 Sobic003G116600 Sobic003G116600 Sobic002G040700--Sobic003G116600 Sobic001G048700 Sobic001G048700 Sobic002G040700--Sobic001G048700 Sobic001G367000 Sobic001G367000 Sobic002G040700--Sobic001G367000 Sobic001G313500 Sobic001G313500 Sobic001G512400--Sobic001G313500 Sobic009G135600 Sobic009G135600 Sobic001G512400--Sobic009G135600 Sobic001G512400--Sobic002G040700 Sobic006G263900 Sobic006G263900 Sobic001G512400--Sobic006G263900 Sobic001G512400--Sobic001G421400 Sobic001G512400--Sobic008G165000 Sobic001G161900 Sobic001G161900 Sobic001G512400--Sobic001G161900 Sobic003G349300 Sobic003G349300 Sobic001G512400--Sobic003G349300 Sobic010G188200 Sobic010G188200 Sobic001G512400--Sobic010G188200 Sobic007G115900 Sobic007G115900 Sobic001G522900--Sobic007G115900 Sobic001G054200 Sobic001G054200 Sobic001G522900--Sobic001G054200 Sobic004G072800 Sobic004G072800 Sobic001G522900--Sobic004G072800 Sobic001G522900--Sobic002G378200 Sobic001G522900--Sobic006G254600 Sobic006G258900 Sobic006G258900 Sobic001G522900--Sobic006G258900 Sobic001G522900--Sobic008G165000 Sobic001G522900--Sobic007G118000 Sobic003G071500 Sobic003G071500 Sobic001G522900--Sobic003G071500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.