Gene annotation
Transcriptome id Sobic.001G489700.1
Synonym COX10, Sb01g045820
Functional annotation prenyltransferase, putative, expressed
UniProt A0A1B6QQ91
Pfam PF01040
Panther DB PTHR11048:SF3 PTHR11048
NCBI CDD -
KEGG Orthology K02257; COX10, ctaB, heme o synthase
Gene Ontology GO:0004659; prenyltransferase activity GO:0016021integral component of membrane


Orthologs (automatic annotation)
TAIR AT2G44520 : cytochrome c oxidase 10
RAP-DB (Rice) LOC_Os01g34390.1 : prenyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a000854 , Zm00025a053339
Brachypodium KQK08191 , KQK08189 , KQK08190
Barley HORVU6Hr1G017590.5 , HORVU6Hr1G017590.1 , HORVU6Hr1G017590.2 , HORVU6Hr1G017590.3 , HORVU6Hr1G017590.6 , HORVU6Hr1G017590.4
Wheat TraesCS1B02G051900 , TraesCS7D02G110900 , TraesCS6A02G097000 , TraesCS6A02G097000 , TraesCS6A02G097000 , TraesCS1B02G051800 , TraesCS6B02G125500 , TraesCS6B02G125500 , TraesCS6B02G125500 , TraesCS6D02G085400 , TraesCS6D02G085400 , TraesCS6D02G085400 , TraesCS1D02G040900
Populus -


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cDNA sequences
Sobic.001G489700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G165000 LSD1 zinc finger domain containing protein, expressed -
2 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
3 Sobic.001G047400 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
4 Sobic.001G307900 LYR motif containing protein, putative, expressed K18167: succinate dehydrogenase assembly factor 1
5 Sobic.004G010900 OsFBK2 - F-box domain and kelch repeat containing protein, expressed -
6 Sobic.009G257200 CK1_CaseinKinase_1.8 - CK1 includes the casein kinase 1 kinases, expressed K02218: CSNK1, casein kinase 1
7 Sobic.006G250900 alpha-1,4-glucan-protein synthase, putative, expressed K13379: RGP, reversibly glycosylated polypeptide / UDP-arabinopyranose mutase
8 Sobic.002G040700 tetratricopeptide repeat, putative, expressed -
9 Sobic.002G281300 trafficking protein particle complex subunit, putative, expressed -
10 Sobic.001G294900 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
11 Sobic.006G254600 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
12 Sobic.009G224000 OsQSOXL1 quiescin-sulfhydryl oxidase-like OsQSOXL1, expressed K10758: thiol oxidase
13 Sobic.002G129000 RING zinc finger protein, putative, expressed -
14 Sobic.001G085100 expressed protein -
15 Sobic.003G400100 leaf senescence related protein, putative, expressed -
16 Sobic.002G268400 expressed protein -
17 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
18 Sobic.003G200800 vacuolar ATP synthase subunit d, putative, expressed K02146: ATPeV0D, V-type H+-transporting ATPase subunit d
19 Sobic.001G261456 - -
20 Sobic.010G149500 E1-BTB2 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -


Gene co-expression network
sample Sobic001G489700 Sobic001G489700 Sobic008G165000 Sobic008G165000 Sobic001G489700--Sobic008G165000 Sobic002G378200 Sobic002G378200 Sobic001G489700--Sobic002G378200 Sobic001G047400 Sobic001G047400 Sobic001G489700--Sobic001G047400 Sobic001G307900 Sobic001G307900 Sobic001G489700--Sobic001G307900 Sobic004G010900 Sobic004G010900 Sobic001G489700--Sobic004G010900 Sobic009G257200 Sobic009G257200 Sobic001G489700--Sobic009G257200 Sobic006G250900 Sobic006G250900 Sobic001G489700--Sobic006G250900 Sobic002G040700 Sobic002G040700 Sobic001G489700--Sobic002G040700 Sobic002G281300 Sobic002G281300 Sobic001G489700--Sobic002G281300 Sobic010G243400 Sobic010G243400 Sobic008G165000--Sobic010G243400 Sobic006G254600 Sobic006G254600 Sobic008G165000--Sobic006G254600 Sobic008G165000--Sobic001G489700 Sobic008G165000--Sobic002G378200 Sobic001G085500 Sobic001G085500 Sobic008G165000--Sobic001G085500 Sobic004G094300 Sobic004G094300 Sobic008G165000--Sobic004G094300 Sobic008G165000--Sobic002G040700 Sobic001G512400 Sobic001G512400 Sobic008G165000--Sobic001G512400 Sobic001G522900 Sobic001G522900 Sobic008G165000--Sobic001G522900 Sobic006G278700 Sobic006G278700 Sobic002G378200--Sobic006G278700 Sobic004G345700 Sobic004G345700 Sobic002G378200--Sobic004G345700 Sobic002G084300 Sobic002G084300 Sobic002G378200--Sobic002G084300 Sobic004G007300 Sobic004G007300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic001G056200 Sobic001G056200 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic003G187200 Sobic003G187200 Sobic002G378200--Sobic003G187200 Sobic002G116900 Sobic002G116900 Sobic001G047400--Sobic002G116900 Sobic009G165800 Sobic009G165800 Sobic001G047400--Sobic009G165800 Sobic010G000900 Sobic010G000900 Sobic001G047400--Sobic010G000900 Sobic001G085100 Sobic001G085100 Sobic001G047400--Sobic001G085100 Sobic010G251000 Sobic010G251000 Sobic001G047400--Sobic010G251000 Sobic003G015900 Sobic003G015900 Sobic001G047400--Sobic003G015900 Sobic001G051200 Sobic001G051200 Sobic001G047400--Sobic001G051200 Sobic001G261436 Sobic001G261436 Sobic001G047400--Sobic001G261436 Sobic009G228700 Sobic009G228700 Sobic001G047400--Sobic009G228700 Sobic006G183000 Sobic006G183000 Sobic001G307900--Sobic006G183000 Sobic001G439600 Sobic001G439600 Sobic001G307900--Sobic001G439600 Sobic001G067900 Sobic001G067900 Sobic001G307900--Sobic001G067900 Sobic003G124800 Sobic003G124800 Sobic001G307900--Sobic003G124800 Sobic003G045400 Sobic003G045400 Sobic001G307900--Sobic003G045400 Sobic001G307900--Sobic001G489700 Sobic001G105100 Sobic001G105100 Sobic001G307900--Sobic001G105100 Sobic002G129000 Sobic002G129000 Sobic001G307900--Sobic002G129000 Sobic001G263000 Sobic001G263000 Sobic001G307900--Sobic001G263000 Sobic001G206900 Sobic001G206900 Sobic004G010900--Sobic001G206900 Sobic001G458700 Sobic001G458700 Sobic004G010900--Sobic001G458700 Sobic004G082900 Sobic004G082900 Sobic004G010900--Sobic004G082900 Sobic006G252200 Sobic006G252200 Sobic004G010900--Sobic006G252200 Sobic010G205300 Sobic010G205300 Sobic004G010900--Sobic010G205300 Sobic003G261400 Sobic003G261400 Sobic004G010900--Sobic003G261400 Sobic001G338400 Sobic001G338400 Sobic004G010900--Sobic001G338400 Sobic001G283200 Sobic001G283200 Sobic004G010900--Sobic001G283200 Sobic003G349300 Sobic003G349300 Sobic004G010900--Sobic003G349300 Sobic009G257200--Sobic003G187200 Sobic009G257200--Sobic009G228700 Sobic004G039600 Sobic004G039600 Sobic009G257200--Sobic004G039600 Sobic002G361300 Sobic002G361300 Sobic009G257200--Sobic002G361300 Sobic007G132100 Sobic007G132100 Sobic009G257200--Sobic007G132100 Sobic010G261600 Sobic010G261600 Sobic009G257200--Sobic010G261600 Sobic009G257200--Sobic002G378200 Sobic002G303600 Sobic002G303600 Sobic009G257200--Sobic002G303600 Sobic001G127000 Sobic001G127000 Sobic009G257200--Sobic001G127000 Sobic006G250900--Sobic002G281300 Sobic006G250900--Sobic001G067900 Sobic006G250900--Sobic003G261400 Sobic006G250900--Sobic002G378200 Sobic003G314100 Sobic003G314100 Sobic006G250900--Sobic003G314100 Sobic003G007500 Sobic003G007500 Sobic006G250900--Sobic003G007500 Sobic001G054200 Sobic001G054200 Sobic006G250900--Sobic001G054200 Sobic003G226500 Sobic003G226500 Sobic006G250900--Sobic003G226500 Sobic010G057900 Sobic010G057900 Sobic006G250900--Sobic010G057900 Sobic002G040700--Sobic001G512400 Sobic002G040700--Sobic001G439600 Sobic002G040700--Sobic008G165000 Sobic001G105500 Sobic001G105500 Sobic002G040700--Sobic001G105500 Sobic007G118000 Sobic007G118000 Sobic002G040700--Sobic007G118000 Sobic002G040700--Sobic004G010900 Sobic003G116600 Sobic003G116600 Sobic002G040700--Sobic003G116600 Sobic001G048700 Sobic001G048700 Sobic002G040700--Sobic001G048700 Sobic001G367000 Sobic001G367000 Sobic002G040700--Sobic001G367000 Sobic002G281300--Sobic003G261400 Sobic002G281300--Sobic006G250900 Sobic002G281300--Sobic003G007500 Sobic002G281300--Sobic001G067900 Sobic002G281300--Sobic010G205300 Sobic001G388200 Sobic001G388200 Sobic002G281300--Sobic001G388200 Sobic004G194900 Sobic004G194900 Sobic002G281300--Sobic004G194900 Sobic002G281300--Sobic001G054200 Sobic002G281300--Sobic003G349300
Octagon: transcription factors


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