Gene annotation
Transcriptome id Sobic.010G256200.2,Sobic.010G256200.1
Synonym Sb10g029340
Functional annotation expressed protein
UniProt C5Z9A8 , A0A194YLG1
Pfam PF07145 PF02845
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os06g49200.1 : expressed protein
MaizeGDB (Corn) Zm00025a041763
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G256200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
2 Sobic.001G123201 - -
3 Sobic.004G242000 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
4 Sobic.002G051200 PHF5-like protein domain containing protein, expressed K12834: PHD finger-like domain-containing protein 5A
5 Sobic.001G154400 expp1 protein precursor, putative, expressed -
6 Sobic.009G060400 proline-rich family protein, putative, expressed -
7 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
8 Sobic.004G318400 MTD1, putative, expressed -
9 Sobic.004G272900 expressed protein -
10 Sobic.004G036800 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
11 Sobic.002G306600 proteasome subunit, putative, expressed K12180: COPS7, COP9 signalosome complex subunit 7
12 Sobic.004G145300 OsFBD12 - F-box and FBD domain containing protein, expressed -
13 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
14 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
15 Sobic.002G252900 DNA repair ATPase-related, putative, expressed -
16 Sobic.009G086200 ubiquitin-conjugating enzyme E2 O, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
17 Sobic.004G015300 expressed protein K16587: HAUS augmin-like complex subunit 4
18 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
19 Sobic.001G458200 protein transport protein Sec61 subunit alpha, putative, expressed K10956: protein transport protein SEC61 subunit alpha
20 Sobic.006G013900 RNA polymerase subunit, putative, expressed K03008: RPB11, DNA-directed RNA polymerase II subunit RPB11


Gene co-expression network
sample Sobic010G256200 Sobic010G256200 Sobic001G157600 Sobic001G157600 Sobic010G256200--Sobic001G157600 Sobic001G123201 Sobic001G123201 Sobic010G256200--Sobic001G123201 Sobic004G242000 Sobic004G242000 Sobic010G256200--Sobic004G242000 Sobic002G051200 Sobic002G051200 Sobic010G256200--Sobic002G051200 Sobic001G154400 Sobic001G154400 Sobic010G256200--Sobic001G154400 Sobic009G060400 Sobic009G060400 Sobic010G256200--Sobic009G060400 Sobic009G030400 Sobic009G030400 Sobic010G256200--Sobic009G030400 Sobic004G318400 Sobic004G318400 Sobic010G256200--Sobic004G318400 Sobic004G272900 Sobic004G272900 Sobic010G256200--Sobic004G272900 Sobic001G157600--Sobic010G256200 Sobic006G245700 Sobic006G245700 Sobic001G157600--Sobic006G245700 Sobic006G127500 Sobic006G127500 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G436300 Sobic001G436300 Sobic001G157600--Sobic001G436300 Sobic001G115500 Sobic001G115500 Sobic001G157600--Sobic001G115500 Sobic010G154000 Sobic010G154000 Sobic001G157600--Sobic010G154000 Sobic002G306600 Sobic002G306600 Sobic001G157600--Sobic002G306600 Sobic009G002000 Sobic009G002000 Sobic001G157600--Sobic009G002000 Sobic001G123201--Sobic010G256200 Sobic003G415100 Sobic003G415100 Sobic001G123201--Sobic003G415100 Sobic003G026900 Sobic003G026900 Sobic001G123201--Sobic003G026900 Sobic004G075700 Sobic004G075700 Sobic001G123201--Sobic004G075700 Sobic008G169800 Sobic008G169800 Sobic001G123201--Sobic008G169800 Sobic006G061100 Sobic006G061100 Sobic001G123201--Sobic006G061100 Sobic006G200901 Sobic006G200901 Sobic001G123201--Sobic006G200901 Sobic001G123201--Sobic001G157600 Sobic004G038900 Sobic004G038900 Sobic001G123201--Sobic004G038900 Sobic004G242000--Sobic010G256200 Sobic002G252900 Sobic002G252900 Sobic004G242000--Sobic002G252900 Sobic003G051100 Sobic003G051100 Sobic004G242000--Sobic003G051100 Sobic004G015300 Sobic004G015300 Sobic004G242000--Sobic004G015300 Sobic002G388100 Sobic002G388100 Sobic004G242000--Sobic002G388100 Sobic009G105000 Sobic009G105000 Sobic004G242000--Sobic009G105000 Sobic004G242000--Sobic003G415100 Sobic004G242000--Sobic002G051200 Sobic004G242000--Sobic009G060400 Sobic006G013900 Sobic006G013900 Sobic002G051200--Sobic006G013900 Sobic006G231700 Sobic006G231700 Sobic002G051200--Sobic006G231700 Sobic002G051200--Sobic010G256200 Sobic002G051200--Sobic001G154400 Sobic001G349400 Sobic001G349400 Sobic002G051200--Sobic001G349400 Sobic003G358300 Sobic003G358300 Sobic002G051200--Sobic003G358300 Sobic003G434000 Sobic003G434000 Sobic002G051200--Sobic003G434000 Sobic004G137900 Sobic004G137900 Sobic002G051200--Sobic004G137900 Sobic009G052500 Sobic009G052500 Sobic002G051200--Sobic009G052500 Sobic002G113500 Sobic002G113500 Sobic001G154400--Sobic002G113500 Sobic001G154400--Sobic006G013900 Sobic001G336050 Sobic001G336050 Sobic001G154400--Sobic001G336050 Sobic004G102900 Sobic004G102900 Sobic001G154400--Sobic004G102900 Sobic001G154400--Sobic004G318400 Sobic001G154400--Sobic002G051200 Sobic004G063500 Sobic004G063500 Sobic001G154400--Sobic004G063500 Sobic001G154400--Sobic010G256200 Sobic003G325700 Sobic003G325700 Sobic001G154400--Sobic003G325700 Sobic009G060400--Sobic006G245700 Sobic007G036800 Sobic007G036800 Sobic009G060400--Sobic007G036800 Sobic009G060400--Sobic010G256200 Sobic001G346700 Sobic001G346700 Sobic009G060400--Sobic001G346700 Sobic001G425200 Sobic001G425200 Sobic009G060400--Sobic001G425200 Sobic003G304800 Sobic003G304800 Sobic009G060400--Sobic003G304800 Sobic009G060400--Sobic001G115500 Sobic006G091850 Sobic006G091850 Sobic009G060400--Sobic006G091850 Sobic008G125000 Sobic008G125000 Sobic009G060400--Sobic008G125000 Sobic005G030100 Sobic005G030100 Sobic009G030400--Sobic005G030100 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic008G160500 Sobic008G160500 Sobic009G030400--Sobic008G160500 Sobic002G390400 Sobic002G390400 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic004G318400--Sobic004G102900 Sobic007G208200 Sobic007G208200 Sobic004G318400--Sobic007G208200 Sobic003G304500 Sobic003G304500 Sobic004G318400--Sobic003G304500 Sobic004G274500 Sobic004G274500 Sobic004G318400--Sobic004G274500 Sobic006G066600 Sobic006G066600 Sobic004G318400--Sobic006G066600 Sobic004G196800 Sobic004G196800 Sobic004G318400--Sobic004G196800 Sobic009G025100 Sobic009G025100 Sobic004G318400--Sobic009G025100 Sobic004G155300 Sobic004G155300 Sobic004G318400--Sobic004G155300 Sobic007G194100 Sobic007G194100 Sobic004G318400--Sobic007G194100 Sobic002G403200 Sobic002G403200 Sobic004G272900--Sobic002G403200 Sobic008G115600 Sobic008G115600 Sobic004G272900--Sobic008G115600 Sobic004G272900--Sobic003G415100 Sobic004G272900--Sobic010G256200 Sobic004G272900--Sobic001G157600 Sobic002G014700 Sobic002G014700 Sobic004G272900--Sobic002G014700 Sobic004G272900--Sobic002G306600 Sobic003G140900 Sobic003G140900 Sobic004G272900--Sobic003G140900 Sobic006G261100 Sobic006G261100 Sobic004G272900--Sobic006G261100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.