Gene annotation
Transcriptome id Sobic.002G142700.1
Synonym Sb02g013138
Functional annotation PPR repeat containing protein, putative, expressed
UniProt C5X6S4
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF543
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G79540 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os09g02260.1 : PPR repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a017621
Brachypodium PNT62794 , KQJ86898
Barley HORVU5Hr1G050230.1 , HORVU5Hr1G050230.3 , HORVU5Hr1G050230.2
Wheat -
Populus -


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cDNA sequences
Sobic.002G142700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
2 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
3 Sobic.002G208400 regulator protein, putative, expressed -
4 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
5 Sobic.003G221500 CENP-C1, putative, expressed -
6 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
7 Sobic.001G229300 expressed protein -
8 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
9 Sobic.003G360300 exostosin family domain containing protein, expressed -
10 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
11 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
12 Sobic.001G123600 domain of unknown function, DUF250 domain containing protein, expressed -
13 Sobic.003G129300 uridine kinase, putative, expressed -
14 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
15 Sobic.002G066800 RNA ligase isoform 1, putative, expressed -
16 Sobic.004G030400 expressed protein -
17 Sobic.004G129500 expressed protein -
18 Sobic.009G003700 PINHEAD, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
19 Sobic.009G113100 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
20 Sobic.002G043000 HEN1, putative, expressed -


Gene co-expression network
sample Sobic002G142700 Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic002G142700--Sobic002G399900 Sobic007G051400 Sobic007G051400 Sobic002G142700--Sobic007G051400 Sobic002G208400 Sobic002G208400 Sobic002G142700--Sobic002G208400 Sobic004G256300 Sobic004G256300 Sobic002G142700--Sobic004G256300 Sobic003G221500 Sobic003G221500 Sobic002G142700--Sobic003G221500 Sobic003G222700 Sobic003G222700 Sobic002G142700--Sobic003G222700 Sobic001G229300 Sobic001G229300 Sobic002G142700--Sobic001G229300 Sobic001G373000 Sobic001G373000 Sobic002G142700--Sobic001G373000 Sobic003G360300 Sobic003G360300 Sobic002G142700--Sobic003G360300 Sobic006G265600 Sobic006G265600 Sobic002G399900--Sobic006G265600 Sobic010G172400 Sobic010G172400 Sobic002G399900--Sobic010G172400 Sobic002G182000 Sobic002G182000 Sobic002G399900--Sobic002G182000 Sobic002G399900--Sobic002G142700 Sobic002G399900--Sobic003G222700 Sobic001G115500 Sobic001G115500 Sobic002G399900--Sobic001G115500 Sobic001G474400 Sobic001G474400 Sobic002G399900--Sobic001G474400 Sobic001G123600 Sobic001G123600 Sobic002G399900--Sobic001G123600 Sobic001G507200 Sobic001G507200 Sobic002G399900--Sobic001G507200 Sobic007G051400--Sobic002G142700 Sobic004G277400 Sobic004G277400 Sobic007G051400--Sobic004G277400 Sobic004G343200 Sobic004G343200 Sobic007G051400--Sobic004G343200 Sobic004G129500 Sobic004G129500 Sobic007G051400--Sobic004G129500 Sobic001G191900 Sobic001G191900 Sobic007G051400--Sobic001G191900 Sobic002G426100 Sobic002G426100 Sobic007G051400--Sobic002G426100 Sobic007G051400--Sobic010G172400 Sobic007G051400--Sobic004G256300 Sobic007G051400--Sobic001G507200 Sobic002G208400--Sobic002G142700 Sobic002G208400--Sobic001G115500 Sobic009G113100 Sobic009G113100 Sobic002G208400--Sobic009G113100 Sobic006G032600 Sobic006G032600 Sobic002G208400--Sobic006G032600 Sobic003G008600 Sobic003G008600 Sobic002G208400--Sobic003G008600 Sobic004G030400 Sobic004G030400 Sobic002G208400--Sobic004G030400 Sobic003G259600 Sobic003G259600 Sobic002G208400--Sobic003G259600 Sobic002G208400--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic002G208400--Sobic003G129300 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic007G022700 Sobic007G022700 Sobic004G256300--Sobic007G022700 Sobic004G256300--Sobic001G229300 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic003G221500--Sobic004G256300 Sobic003G221500--Sobic002G142700 Sobic003G221500--Sobic003G004600 Sobic010G236200 Sobic010G236200 Sobic003G221500--Sobic010G236200 Sobic001G462600 Sobic001G462600 Sobic003G221500--Sobic001G462600 Sobic003G221500--Sobic006G245700 Sobic009G032200 Sobic009G032200 Sobic003G221500--Sobic009G032200 Sobic010G154000 Sobic010G154000 Sobic003G221500--Sobic010G154000 Sobic003G221500--Sobic003G222700 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic003G222700--Sobic001G229300 Sobic003G222700--Sobic002G142700 Sobic003G222700--Sobic002G399900 Sobic001G229300--Sobic001G123600 Sobic001G229300--Sobic003G129300 Sobic004G354100 Sobic004G354100 Sobic001G229300--Sobic004G354100 Sobic001G229300--Sobic004G256300 Sobic003G010900 Sobic003G010900 Sobic001G229300--Sobic003G010900 Sobic002G066800 Sobic002G066800 Sobic001G229300--Sobic002G066800 Sobic001G229300--Sobic003G222700 Sobic001G229300--Sobic002G142700 Sobic006G106600 Sobic006G106600 Sobic001G229300--Sobic006G106600 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic010G188000 Sobic010G188000 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic003G360300--Sobic003G259600 Sobic003G360300--Sobic001G123600 Sobic010G269300 Sobic010G269300 Sobic003G360300--Sobic010G269300 Sobic007G047600 Sobic007G047600 Sobic003G360300--Sobic007G047600 Sobic006G179300 Sobic006G179300 Sobic003G360300--Sobic006G179300 Sobic003G360300--Sobic002G142700 Sobic004G342300 Sobic004G342300 Sobic003G360300--Sobic004G342300 Sobic003G360300--Sobic004G277400 Sobic008G080500 Sobic008G080500 Sobic003G360300--Sobic008G080500
Octagon: transcription factors


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