Gene annotation
Transcriptome id Sobic.004G256300.1,Sobic.004G256300.5,Sobic.004G256300.3,Sobic.004G256300.2,Sobic.004G256300.4
Synonym NRPD4, RDM2, NRPE4, Sb04g029490
Functional annotation RNA polymerase Rpb4, putative, expressed
UniProt A0A194YRJ9 , A0A194YSQ4 , A0A194YRN9
Pfam PF03874
Panther DB PTHR21297 PTHR21297:SF2
NCBI CDD KOG2351; RNA polymerase II, fourth largest subunit
KEGG Orthology K03012; RPB4, DNA-directed RNA polymerase II subunit RPB4
Gene Ontology GO:0006351; transcription, DNA-templated GO:0003899DNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT4G15950 : RNA polymerase II, Rpb4, core protein
RAP-DB (Rice) LOC_Os02g49150.1,LOC_Os02g49150.2 : RNA polymerase Rpb4, putative, expressed
MaizeGDB (Corn) Zm00025a032551
Brachypodium -
Barley HORVU6Hr1G071930.7 , HORVU6Hr1G071930.10 , HORVU6Hr1G071930.3 , HORVU6Hr1G071930.5 , HORVU6Hr1G071930.6 , HORVU6Hr1G071930.1 , HORVU6Hr1G071930.2 , HORVU6Hr1G071930.4
Wheat TraesCS6D02G266800 , TraesCS6D02G266900
Populus -


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cDNA sequences
Sobic.004G256300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G221500 CENP-C1, putative, expressed -
2 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
3 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
4 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
5 Sobic.001G229300 expressed protein -
6 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
7 Sobic.001G487100 RNA recognition motif containing protein, putative, expressed -
8 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
9 Sobic.003G004600 expressed protein -
10 Sobic.004G129500 expressed protein -
11 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
12 Sobic.006G049100 expressed protein -
13 Sobic.007G036800 xylosyltransferase, putative, expressed -
14 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
15 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
16 Sobic.001G151600 OsRhmbd9 - Putative Rhomboid homologue, expressed -
17 Sobic.004G354100 OsSigP5 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed K13280: SEC11, signal peptidase I
18 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
19 Sobic.003G023200 DNA repair protein Rad51, putative, expressed K10870: RAD51L2, RAD51-like protein 2
20 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4


Gene co-expression network
sample Sobic004G256300 Sobic004G256300 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic003G222700 Sobic003G222700 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic007G022700 Sobic007G022700 Sobic004G256300--Sobic007G022700 Sobic001G229300 Sobic001G229300 Sobic004G256300--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic001G467100 Sobic001G467100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic003G221500--Sobic004G256300 Sobic003G221500--Sobic002G142700 Sobic003G221500--Sobic003G004600 Sobic010G236200 Sobic010G236200 Sobic003G221500--Sobic010G236200 Sobic001G462600 Sobic001G462600 Sobic003G221500--Sobic001G462600 Sobic003G221500--Sobic006G245700 Sobic009G032200 Sobic009G032200 Sobic003G221500--Sobic009G032200 Sobic010G154000 Sobic010G154000 Sobic003G221500--Sobic010G154000 Sobic003G221500--Sobic003G222700 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic010G172400 Sobic010G172400 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic003G222700--Sobic001G229300 Sobic003G222700--Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic003G222700--Sobic002G399900 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic007G022700--Sobic004G256300 Sobic007G022700--Sobic003G222700 Sobic003G085500 Sobic003G085500 Sobic007G022700--Sobic003G085500 Sobic002G232400 Sobic002G232400 Sobic007G022700--Sobic002G232400 Sobic009G207200 Sobic009G207200 Sobic007G022700--Sobic009G207200 Sobic004G186100 Sobic004G186100 Sobic007G022700--Sobic004G186100 Sobic001G191900 Sobic001G191900 Sobic007G022700--Sobic001G191900 Sobic006G259900 Sobic006G259900 Sobic007G022700--Sobic006G259900 Sobic003G005900 Sobic003G005900 Sobic007G022700--Sobic003G005900 Sobic001G123600 Sobic001G123600 Sobic001G229300--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic001G229300--Sobic003G129300 Sobic004G354100 Sobic004G354100 Sobic001G229300--Sobic004G354100 Sobic001G229300--Sobic004G256300 Sobic003G010900 Sobic003G010900 Sobic001G229300--Sobic003G010900 Sobic002G066800 Sobic002G066800 Sobic001G229300--Sobic002G066800 Sobic001G229300--Sobic003G222700 Sobic001G229300--Sobic002G142700 Sobic006G106600 Sobic006G106600 Sobic001G229300--Sobic006G106600 Sobic002G142700--Sobic002G399900 Sobic007G051400 Sobic007G051400 Sobic002G142700--Sobic007G051400 Sobic002G208400 Sobic002G208400 Sobic002G142700--Sobic002G208400 Sobic002G142700--Sobic004G256300 Sobic002G142700--Sobic003G221500 Sobic002G142700--Sobic003G222700 Sobic002G142700--Sobic001G229300 Sobic001G373000 Sobic001G373000 Sobic002G142700--Sobic001G373000 Sobic003G360300 Sobic003G360300 Sobic002G142700--Sobic003G360300 Sobic003G132000 Sobic003G132000 Sobic001G487100--Sobic003G132000 Sobic004G320100 Sobic004G320100 Sobic001G487100--Sobic004G320100 Sobic006G049100 Sobic006G049100 Sobic001G487100--Sobic006G049100 Sobic003G046300 Sobic003G046300 Sobic001G487100--Sobic003G046300 Sobic003G121300 Sobic003G121300 Sobic001G487100--Sobic003G121300 Sobic001G506000 Sobic001G506000 Sobic001G487100--Sobic001G506000 Sobic003G128300 Sobic003G128300 Sobic001G487100--Sobic003G128300 Sobic001G487100--Sobic004G256300 Sobic005G115500 Sobic005G115500 Sobic001G487100--Sobic005G115500 Sobic004G208500 Sobic004G208500 Sobic001G467100--Sobic004G208500 Sobic001G467100--Sobic010G172400 Sobic001G474400 Sobic001G474400 Sobic001G467100--Sobic001G474400 Sobic001G099900 Sobic001G099900 Sobic001G467100--Sobic001G099900 Sobic001G467100--Sobic003G222700 Sobic007G145400 Sobic007G145400 Sobic001G467100--Sobic007G145400 Sobic005G114500 Sobic005G114500 Sobic001G467100--Sobic005G114500 Sobic001G161700 Sobic001G161700 Sobic001G467100--Sobic001G161700 Sobic005G110499 Sobic005G110499 Sobic001G467100--Sobic005G110499 Sobic002G306600 Sobic002G306600 Sobic003G004600--Sobic002G306600 Sobic003G004600--Sobic003G221500 Sobic003G004600--Sobic004G256300 Sobic003G004600--Sobic003G222700 Sobic007G148400 Sobic007G148400 Sobic003G004600--Sobic007G148400 Sobic004G063300 Sobic004G063300 Sobic003G004600--Sobic004G063300 Sobic003G004600--Sobic003G010900 Sobic003G004600--Sobic003G132000 Sobic003G004600--Sobic003G128300
Octagon: transcription factors


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