Gene annotation
Transcriptome id Sobic.004G075200.1
Synonym Sb04g006210
Functional annotation protein kinase PKN/PRK1, effector, putative, expressed
UniProt C5XXC9
Pfam -
Panther DB PTHR33405 PTHR33405:SF5
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G67170 : -
RAP-DB (Rice) LOC_Os02g09890.1 : protein kinase PKN/PRK1, effector, putative, expressed
MaizeGDB (Corn) Zm00025a034693
Brachypodium -
Barley HORVU6Hr1G034720.2 , HORVU6Hr1G034720.3 , HORVU6Hr1G034720.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G075200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G207200 ER lumen protein retaining receptor, putative, expressed K10949: ER lumen protein retaining receptor
2 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
3 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
4 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
5 Sobic.007G047600 expressed protein -
6 Sobic.006G029400 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
8 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
9 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
10 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
11 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
12 Sobic.010G179700 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
13 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
14 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
15 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
16 Sobic.009G151800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
17 Sobic.001G358500 GA20734-PA, putative, expressed -
18 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
19 Sobic.007G022700 proteasome subunit, putative, expressed K12177: COPS3, COP9 signalosome complex subunit 3
20 Sobic.005G115500 bifunctional dihydrofolate reductase-thymidylate synthase, putative, expressed K13998: dihydrofolate reductase / thymidylate synthase


Gene co-expression network
sample Sobic004G075200 Sobic004G075200 Sobic009G207200 Sobic009G207200 Sobic004G075200--Sobic009G207200 Sobic001G469200 Sobic001G469200 Sobic004G075200--Sobic001G469200 Sobic008G125000 Sobic008G125000 Sobic004G075200--Sobic008G125000 Sobic001G467100 Sobic001G467100 Sobic004G075200--Sobic001G467100 Sobic007G047600 Sobic007G047600 Sobic004G075200--Sobic007G047600 Sobic006G029400 Sobic006G029400 Sobic004G075200--Sobic006G029400 Sobic004G256300 Sobic004G256300 Sobic004G075200--Sobic004G256300 Sobic003G008600 Sobic003G008600 Sobic004G075200--Sobic003G008600 Sobic006G245700 Sobic006G245700 Sobic004G075200--Sobic006G245700 Sobic006G094600 Sobic006G094600 Sobic009G207200--Sobic006G094600 Sobic001G061200 Sobic001G061200 Sobic009G207200--Sobic001G061200 Sobic001G358500 Sobic001G358500 Sobic009G207200--Sobic001G358500 Sobic002G029300 Sobic002G029300 Sobic009G207200--Sobic002G029300 Sobic003G005900 Sobic003G005900 Sobic009G207200--Sobic003G005900 Sobic007G217400 Sobic007G217400 Sobic009G207200--Sobic007G217400 Sobic008G072200 Sobic008G072200 Sobic009G207200--Sobic008G072200 Sobic009G207200--Sobic004G075200 Sobic007G022700 Sobic007G022700 Sobic009G207200--Sobic007G022700 Sobic002G199400 Sobic002G199400 Sobic001G469200--Sobic002G199400 Sobic001G115500 Sobic001G115500 Sobic001G469200--Sobic001G115500 Sobic001G085800 Sobic001G085800 Sobic001G469200--Sobic001G085800 Sobic005G115500 Sobic005G115500 Sobic001G469200--Sobic005G115500 Sobic003G132000 Sobic003G132000 Sobic001G469200--Sobic003G132000 Sobic001G469200--Sobic004G075200 Sobic010G108900 Sobic010G108900 Sobic001G469200--Sobic010G108900 Sobic001G469200--Sobic006G245700 Sobic001G487100 Sobic001G487100 Sobic001G469200--Sobic001G487100 Sobic009G056300 Sobic009G056300 Sobic008G125000--Sobic009G056300 Sobic008G125000--Sobic001G115500 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic004G208500 Sobic004G208500 Sobic001G467100--Sobic004G208500 Sobic010G172400 Sobic010G172400 Sobic001G467100--Sobic010G172400 Sobic001G474400 Sobic001G474400 Sobic001G467100--Sobic001G474400 Sobic001G099900 Sobic001G099900 Sobic001G467100--Sobic001G099900 Sobic003G222700 Sobic003G222700 Sobic001G467100--Sobic003G222700 Sobic007G145400 Sobic007G145400 Sobic001G467100--Sobic007G145400 Sobic005G114500 Sobic005G114500 Sobic001G467100--Sobic005G114500 Sobic001G161700 Sobic001G161700 Sobic001G467100--Sobic001G161700 Sobic005G110499 Sobic005G110499 Sobic001G467100--Sobic005G110499 Sobic002G412700 Sobic002G412700 Sobic007G047600--Sobic002G412700 Sobic007G047600--Sobic007G145400 Sobic008G092800 Sobic008G092800 Sobic007G047600--Sobic008G092800 Sobic004G356200 Sobic004G356200 Sobic007G047600--Sobic004G356200 Sobic003G360300 Sobic003G360300 Sobic007G047600--Sobic003G360300 Sobic008G080500 Sobic008G080500 Sobic007G047600--Sobic008G080500 Sobic006G280100 Sobic006G280100 Sobic007G047600--Sobic006G280100 Sobic002G119600 Sobic002G119600 Sobic007G047600--Sobic002G119600 Sobic007G047600--Sobic001G467100 Sobic002G297600 Sobic002G297600 Sobic006G029400--Sobic002G297600 Sobic006G029400--Sobic004G075200 Sobic002G254500 Sobic002G254500 Sobic006G029400--Sobic002G254500 Sobic009G041800 Sobic009G041800 Sobic006G029400--Sobic009G041800 Sobic001G413100 Sobic001G413100 Sobic006G029400--Sobic001G413100 Sobic002G399900 Sobic002G399900 Sobic006G029400--Sobic002G399900 Sobic001G035400 Sobic001G035400 Sobic006G029400--Sobic001G035400 Sobic006G029400--Sobic003G008600 Sobic002G264300 Sobic002G264300 Sobic006G029400--Sobic002G264300 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic004G256300--Sobic006G245700 Sobic004G256300--Sobic007G022700 Sobic001G229300 Sobic001G229300 Sobic004G256300--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic004G256300--Sobic002G142700 Sobic004G256300--Sobic001G487100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic001G008500 Sobic001G008500 Sobic003G008600--Sobic001G008500 Sobic003G008600--Sobic001G115500 Sobic002G423500 Sobic002G423500 Sobic003G008600--Sobic002G423500 Sobic002G365900 Sobic002G365900 Sobic003G008600--Sobic002G365900 Sobic002G208400 Sobic002G208400 Sobic003G008600--Sobic002G208400 Sobic004G215700 Sobic004G215700 Sobic003G008600--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic003G008600--Sobic001G460500 Sobic003G008600--Sobic004G075200 Sobic003G130000 Sobic003G130000 Sobic003G008600--Sobic003G130000 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic006G245700--Sobic008G125000 Sobic003G274400 Sobic003G274400 Sobic006G245700--Sobic003G274400 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic001G436300 Sobic001G436300 Sobic006G245700--Sobic001G436300 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600
Octagon: transcription factors


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