Gene annotation
Transcriptome id Sobic.003G008600.1
Synonym Sb03g000920
Functional annotation eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed
UniProt C5XJP4
Pfam PF10255
Panther DB PTHR13242
NCBI CDD KOG3677; RNA polymerase I-associated factor - PAF67
KEGG Orthology K15029; translation initiation factor 3 subunit L
Gene Ontology GO:0005852; eukaryotic translation initiation factor 3 complex GO:0005737cytoplasm GO:0003743translation initiation factor activity


Orthologs (automatic annotation)
TAIR AT5G25757 : RNA polymerase I-associated factor PAF67
RAP-DB (Rice) LOC_Os01g12870.1 : eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed
MaizeGDB (Corn) Zm00025a022833 , Zm00025a035985
Brachypodium KQK03408
Barley HORVU3Hr1G031330.3 , HORVU3Hr1G031330.2 , HORVU3Hr1G031330.1 , HORVU3Hr1G031330.4 , HORVU3Hr1G076960.2 , HORVU3Hr1G076960.1
Wheat TraesCS3B02G180500 , TraesCS3D02G315200 , TraesCS3A02G316200 , TraesCS3B02G350700 , TraesCS3D02G161300 , TraesCS3A02G153900
Populus -


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cDNA sequences
Sobic.003G008600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
2 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
3 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
4 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
5 Sobic.002G208400 regulator protein, putative, expressed -
6 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
7 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
8 Sobic.004G075200 protein kinase PKN/PRK1, effector, putative, expressed -
9 Sobic.003G130000 outer mitochondrial membrane porin, putative, expressed K11518: mitochondrial import receptor subunit TOM40
10 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
11 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
12 Sobic.002G408900 adenyl cyclase, putative, expressed -
13 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
14 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
15 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
16 Sobic.010G236600 oligopeptidase, putative, expressed K01410: mitochondrial intermediate peptidase
17 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
18 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
19 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
20 Sobic.006G029400 GDSL-like lipase/acylhydrolase, putative, expressed -


Gene co-expression network
sample Sobic003G008600 Sobic003G008600 Sobic001G008500 Sobic001G008500 Sobic003G008600--Sobic001G008500 Sobic001G115500 Sobic001G115500 Sobic003G008600--Sobic001G115500 Sobic002G423500 Sobic002G423500 Sobic003G008600--Sobic002G423500 Sobic002G365900 Sobic002G365900 Sobic003G008600--Sobic002G365900 Sobic002G208400 Sobic002G208400 Sobic003G008600--Sobic002G208400 Sobic004G215700 Sobic004G215700 Sobic003G008600--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic003G008600--Sobic001G460500 Sobic004G075200 Sobic004G075200 Sobic003G008600--Sobic004G075200 Sobic003G130000 Sobic003G130000 Sobic003G008600--Sobic003G130000 Sobic004G047200 Sobic004G047200 Sobic001G008500--Sobic004G047200 Sobic006G251600 Sobic006G251600 Sobic001G008500--Sobic006G251600 Sobic001G008500--Sobic003G008600 Sobic001G008500--Sobic001G115500 Sobic009G071700 Sobic009G071700 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic001G008500--Sobic002G423500 Sobic001G371100 Sobic001G371100 Sobic001G008500--Sobic001G371100 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G115500--Sobic001G008500 Sobic001G115500--Sobic003G008600 Sobic004G249300 Sobic004G249300 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic005G163700 Sobic005G163700 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic002G365900--Sobic006G251600 Sobic002G365900--Sobic003G008600 Sobic002G365900--Sobic001G008500 Sobic002G365900--Sobic002G423500 Sobic002G365900--Sobic009G071700 Sobic004G252000 Sobic004G252000 Sobic002G365900--Sobic004G252000 Sobic001G488100 Sobic001G488100 Sobic002G365900--Sobic001G488100 Sobic010G205900 Sobic010G205900 Sobic002G365900--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic002G365900--Sobic004G173100 Sobic002G142700 Sobic002G142700 Sobic002G208400--Sobic002G142700 Sobic002G208400--Sobic001G115500 Sobic009G113100 Sobic009G113100 Sobic002G208400--Sobic009G113100 Sobic006G032600 Sobic006G032600 Sobic002G208400--Sobic006G032600 Sobic002G208400--Sobic003G008600 Sobic004G030400 Sobic004G030400 Sobic002G208400--Sobic004G030400 Sobic003G259600 Sobic003G259600 Sobic002G208400--Sobic003G259600 Sobic001G123600 Sobic001G123600 Sobic002G208400--Sobic001G123600 Sobic003G129300 Sobic003G129300 Sobic002G208400--Sobic003G129300 Sobic004G215700--Sobic002G423500 Sobic004G215700--Sobic004G326600 Sobic004G215700--Sobic005G163700 Sobic006G024700 Sobic006G024700 Sobic004G215700--Sobic006G024700 Sobic004G215700--Sobic004G047200 Sobic004G215700--Sobic001G460500 Sobic004G215700--Sobic003G008600 Sobic003G388900 Sobic003G388900 Sobic004G215700--Sobic003G388900 Sobic004G212100 Sobic004G212100 Sobic004G215700--Sobic004G212100 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic001G460500--Sobic002G014400 Sobic004G208500 Sobic004G208500 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic001G460500--Sobic004G047200 Sobic002G412700 Sobic002G412700 Sobic001G460500--Sobic002G412700 Sobic001G251600 Sobic001G251600 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic009G207200 Sobic009G207200 Sobic004G075200--Sobic009G207200 Sobic001G469200 Sobic001G469200 Sobic004G075200--Sobic001G469200 Sobic004G075200--Sobic008G125000 Sobic004G075200--Sobic001G467100 Sobic007G047600 Sobic007G047600 Sobic004G075200--Sobic007G047600 Sobic006G029400 Sobic006G029400 Sobic004G075200--Sobic006G029400 Sobic004G256300 Sobic004G256300 Sobic004G075200--Sobic004G256300 Sobic004G075200--Sobic003G008600 Sobic006G245700 Sobic006G245700 Sobic004G075200--Sobic006G245700 Sobic009G041800 Sobic009G041800 Sobic003G130000--Sobic009G041800 Sobic001G167500 Sobic001G167500 Sobic003G130000--Sobic001G167500 Sobic003G235700 Sobic003G235700 Sobic003G130000--Sobic003G235700 Sobic010G134100 Sobic010G134100 Sobic003G130000--Sobic010G134100 Sobic003G130000--Sobic006G251600 Sobic003G205400 Sobic003G205400 Sobic003G130000--Sobic003G205400 Sobic003G130000--Sobic003G008600 Sobic005G098000 Sobic005G098000 Sobic003G130000--Sobic005G098000 Sobic001G268300 Sobic001G268300 Sobic003G130000--Sobic001G268300
Octagon: transcription factors


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