Gene annotation
Transcriptome id Sobic.004G047200.1
Synonym Sb04g004030
Functional annotation T-complex protein, putative, expressed
UniProt C5XVC9
Pfam PF00118
Panther DB PTHR11353 PTHR11353:SF22
NCBI CDD -
KEGG Orthology K09499; T-complex protein 1 subunit eta
Gene Ontology GO:0005524; ATP binding GO:0006457protein folding


Orthologs (automatic annotation)
TAIR AT3G11830 : TCP-1/cpn60 chaperonin family protein
RAP-DB (Rice) LOC_Os06g47320.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a034862
Brachypodium KQJ93414
Barley HORVU6Hr1G025270.6 , HORVU6Hr1G025270.7 , HORVU6Hr1G025270.3 , HORVU6Hr1G025270.1 , HORVU6Hr1G025270.8 , HORVU6Hr1G025270.4 , HORVU6Hr1G025270.5 , HORVU6Hr1G025270.2
Wheat TraesCS6B02G159800 , TraesCS6A02G131400 , TraesCS6A02G131400 , TraesCS6D02G121300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
2 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
3 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
4 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
5 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
6 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
7 Sobic.004G215700 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
8 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
9 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
10 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
11 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
12 Sobic.006G041100 nuclear transport factor 2, putative, expressed -
13 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
14 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
15 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
16 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
17 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
18 Sobic.003G008600 eukaryotic translation initiation factor 3 subunit E-interacting protein, putative, expressed K15029: translation initiation factor 3 subunit L
19 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
20 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2


Gene co-expression network
sample Sobic004G047200 Sobic004G047200 Sobic004G326600 Sobic004G326600 Sobic004G047200--Sobic004G326600 Sobic002G423500 Sobic002G423500 Sobic004G047200--Sobic002G423500 Sobic002G014400 Sobic002G014400 Sobic004G047200--Sobic002G014400 Sobic001G008500 Sobic001G008500 Sobic004G047200--Sobic001G008500 Sobic005G163700 Sobic005G163700 Sobic004G047200--Sobic005G163700 Sobic001G530800 Sobic001G530800 Sobic004G047200--Sobic001G530800 Sobic004G215700 Sobic004G215700 Sobic004G047200--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic004G047200--Sobic001G460500 Sobic001G371100 Sobic001G371100 Sobic004G047200--Sobic001G371100 Sobic004G326600--Sobic004G047200 Sobic004G326600--Sobic002G014400 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G326600--Sobic004G215700 Sobic002G341800 Sobic002G341800 Sobic004G326600--Sobic002G341800 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G423500--Sobic002G014400 Sobic002G423500--Sobic001G460500 Sobic002G423500--Sobic004G326600 Sobic002G423500--Sobic004G215700 Sobic001G522000 Sobic001G522000 Sobic002G423500--Sobic001G522000 Sobic006G041100 Sobic006G041100 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic002G014400--Sobic004G047200 Sobic002G014400--Sobic004G326600 Sobic002G014400--Sobic002G423500 Sobic002G014400--Sobic005G163700 Sobic002G014400--Sobic002G341800 Sobic002G014400--Sobic001G460500 Sobic002G394600 Sobic002G394600 Sobic002G014400--Sobic002G394600 Sobic006G044600 Sobic006G044600 Sobic002G014400--Sobic006G044600 Sobic001G251600 Sobic001G251600 Sobic002G014400--Sobic001G251600 Sobic001G008500--Sobic004G047200 Sobic006G251600 Sobic006G251600 Sobic001G008500--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic001G008500--Sobic003G008600 Sobic001G115500 Sobic001G115500 Sobic001G008500--Sobic001G115500 Sobic009G071700 Sobic009G071700 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic001G008500--Sobic002G423500 Sobic001G008500--Sobic001G371100 Sobic005G163700--Sobic001G460500 Sobic005G163700--Sobic002G423500 Sobic005G163700--Sobic002G014400 Sobic005G163700--Sobic004G047200 Sobic005G163700--Sobic004G215700 Sobic005G163700--Sobic004G326600 Sobic005G163700--Sobic001G467100 Sobic004G208500 Sobic004G208500 Sobic005G163700--Sobic004G208500 Sobic002G412700 Sobic002G412700 Sobic005G163700--Sobic002G412700 Sobic001G530800--Sobic004G047200 Sobic001G214900 Sobic001G214900 Sobic001G530800--Sobic001G214900 Sobic001G026600 Sobic001G026600 Sobic001G530800--Sobic001G026600 Sobic001G530800--Sobic001G371100 Sobic009G234400 Sobic009G234400 Sobic001G530800--Sobic009G234400 Sobic001G530800--Sobic002G423500 Sobic002G054000 Sobic002G054000 Sobic001G530800--Sobic002G054000 Sobic001G196100 Sobic001G196100 Sobic001G530800--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic001G530800--Sobic010G277000 Sobic004G215700--Sobic002G423500 Sobic004G215700--Sobic004G326600 Sobic004G215700--Sobic005G163700 Sobic006G024700 Sobic006G024700 Sobic004G215700--Sobic006G024700 Sobic004G215700--Sobic004G047200 Sobic004G215700--Sobic001G460500 Sobic004G215700--Sobic003G008600 Sobic003G388900 Sobic003G388900 Sobic004G215700--Sobic003G388900 Sobic004G212100 Sobic004G212100 Sobic004G215700--Sobic004G212100 Sobic001G460500--Sobic005G163700 Sobic001G460500--Sobic002G423500 Sobic001G460500--Sobic002G014400 Sobic001G460500--Sobic004G208500 Sobic010G081700 Sobic010G081700 Sobic001G460500--Sobic010G081700 Sobic001G460500--Sobic004G047200 Sobic001G460500--Sobic002G412700 Sobic001G460500--Sobic001G251600 Sobic003G099300 Sobic003G099300 Sobic001G460500--Sobic003G099300 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G371100--Sobic001G530800 Sobic001G371100--Sobic006G251600 Sobic001G371100--Sobic004G047200 Sobic008G083400 Sobic008G083400 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200
Octagon: transcription factors


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