Gene annotation
Transcriptome id Sobic.006G041100.2
Synonym Sb06g009000
Functional annotation nuclear transport factor 2, putative, expressed
UniProt A0A1Z5RC48
Pfam PF02136
Panther DB PTHR10693 PTHR10693:SF28
NCBI CDD KOG0116; RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains
KEGG Orthology -
Gene Ontology GO:0006810; transport GO:0005622intracellular


Orthologs (automatic annotation)
TAIR AT3G25150 : Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
RAP-DB (Rice) LOC_Os04g30430.1 : nuclear transport factor 2, putative, expressed
MaizeGDB (Corn) Zm00025a055818 , Zm00025a011894 , Zm00025a020366
Brachypodium -
Barley HORVU2Hr1G042280.1 , HORVU2Hr1G042280.2 , HORVU2Hr1G042280.3 , HORVU2Hr1G042280.4
Wheat TraesCS2A02G278000 , TraesCS2A02G278000 , TraesCS2A02G278000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G423500 T-complex protein, putative, expressed K09498: T-complex protein 1 subunit zeta
2 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
3 Sobic.001G522000 mitochondrial carrier protein, putative, expressed K05863: SLC25A4S, solute carrier family 25 (mitochondrial adenine nucleotide translocator), member 4/5/6/31
4 Sobic.002G402500 ribosomal protein, putative, expressed K02996: RP-S9, MRPS9, small subunit ribosomal protein S9
5 Sobic.009G120500 golgi transport complex protein-related, putative, expressed -
6 Sobic.005G163700 T-complex protein, putative, expressed K09500: T-complex protein 1 subunit theta
7 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
8 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
9 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
10 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
11 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma
12 Sobic.002G399900 OsRhmbd13 - Putative Rhomboid homologue, expressed -
13 Sobic.001G520300 dolichyl-diphosphooligosaccharide--protein glycosyltransferase 67 kDasubunit precursor, putative, expressed K12666: OST1, oligosaccharyltransferase complex subunit alpha (ribophorin I)
14 Sobic.010G172400 transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
15 Sobic.001G467100 SURF1, putative, expressed K14998: SURF1, surfeit locus 1 family protein
16 Sobic.002G014400 T-complex protein, putative, expressed K09497: T-complex protein 1 subunit epsilon
17 Sobic.004G358900 Sec1 family transport protein, putative, expressed -
18 Sobic.001G117800 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
19 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -
20 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD


Gene co-expression network
sample Sobic006G041100 Sobic006G041100 Sobic002G423500 Sobic002G423500 Sobic006G041100--Sobic002G423500 Sobic006G265600 Sobic006G265600 Sobic006G041100--Sobic006G265600 Sobic001G522000 Sobic001G522000 Sobic006G041100--Sobic001G522000 Sobic002G402500 Sobic002G402500 Sobic006G041100--Sobic002G402500 Sobic009G120500 Sobic009G120500 Sobic006G041100--Sobic009G120500 Sobic005G163700 Sobic005G163700 Sobic006G041100--Sobic005G163700 Sobic004G047200 Sobic004G047200 Sobic006G041100--Sobic004G047200 Sobic001G008500 Sobic001G008500 Sobic006G041100--Sobic001G008500 Sobic001G530800 Sobic001G530800 Sobic006G041100--Sobic001G530800 Sobic002G423500--Sobic005G163700 Sobic002G423500--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic002G423500--Sobic002G014400 Sobic001G460500 Sobic001G460500 Sobic002G423500--Sobic001G460500 Sobic004G326600 Sobic004G326600 Sobic002G423500--Sobic004G326600 Sobic004G215700 Sobic004G215700 Sobic002G423500--Sobic004G215700 Sobic002G423500--Sobic001G522000 Sobic002G423500--Sobic006G041100 Sobic001G467100 Sobic001G467100 Sobic002G423500--Sobic001G467100 Sobic003G397900 Sobic003G397900 Sobic006G265600--Sobic003G397900 Sobic001G474400 Sobic001G474400 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic003G005900 Sobic003G005900 Sobic006G265600--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic006G265600--Sobic001G151600 Sobic002G075900 Sobic002G075900 Sobic006G265600--Sobic002G075900 Sobic002G160700 Sobic002G160700 Sobic006G265600--Sobic002G160700 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900 Sobic002G367800 Sobic002G367800 Sobic001G522000--Sobic002G367800 Sobic001G522000--Sobic002G423500 Sobic001G490500 Sobic001G490500 Sobic001G522000--Sobic001G490500 Sobic001G522000--Sobic006G041100 Sobic003G388900 Sobic003G388900 Sobic001G522000--Sobic003G388900 Sobic003G205400 Sobic003G205400 Sobic001G522000--Sobic003G205400 Sobic001G522000--Sobic002G402500 Sobic001G522000--Sobic006G265600 Sobic001G117800 Sobic001G117800 Sobic001G522000--Sobic001G117800 Sobic003G326900 Sobic003G326900 Sobic002G402500--Sobic003G326900 Sobic002G402500--Sobic003G205400 Sobic002G402500--Sobic003G388900 Sobic001G060300 Sobic001G060300 Sobic002G402500--Sobic001G060300 Sobic001G214900 Sobic001G214900 Sobic002G402500--Sobic001G214900 Sobic002G402500--Sobic001G522000 Sobic002G402500--Sobic006G041100 Sobic002G402500--Sobic002G367800 Sobic003G113400 Sobic003G113400 Sobic002G402500--Sobic003G113400 Sobic009G120500--Sobic001G117800 Sobic003G240700 Sobic003G240700 Sobic009G120500--Sobic003G240700 Sobic003G314700 Sobic003G314700 Sobic009G120500--Sobic003G314700 Sobic009G120500--Sobic001G474400 Sobic009G120500--Sobic006G265600 Sobic003G029600 Sobic003G029600 Sobic009G120500--Sobic003G029600 Sobic004G358900 Sobic004G358900 Sobic009G120500--Sobic004G358900 Sobic005G059500 Sobic005G059500 Sobic009G120500--Sobic005G059500 Sobic001G449900 Sobic001G449900 Sobic009G120500--Sobic001G449900 Sobic005G163700--Sobic001G460500 Sobic005G163700--Sobic002G423500 Sobic005G163700--Sobic002G014400 Sobic005G163700--Sobic004G047200 Sobic005G163700--Sobic004G215700 Sobic005G163700--Sobic004G326600 Sobic005G163700--Sobic001G467100 Sobic004G208500 Sobic004G208500 Sobic005G163700--Sobic004G208500 Sobic002G412700 Sobic002G412700 Sobic005G163700--Sobic002G412700 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic004G047200--Sobic002G014400 Sobic004G047200--Sobic001G008500 Sobic004G047200--Sobic005G163700 Sobic004G047200--Sobic001G530800 Sobic004G047200--Sobic004G215700 Sobic004G047200--Sobic001G460500 Sobic001G371100 Sobic001G371100 Sobic004G047200--Sobic001G371100 Sobic001G008500--Sobic004G047200 Sobic006G251600 Sobic006G251600 Sobic001G008500--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic001G008500--Sobic003G008600 Sobic001G115500 Sobic001G115500 Sobic001G008500--Sobic001G115500 Sobic009G071700 Sobic009G071700 Sobic001G008500--Sobic009G071700 Sobic010G188000 Sobic010G188000 Sobic001G008500--Sobic010G188000 Sobic001G436300 Sobic001G436300 Sobic001G008500--Sobic001G436300 Sobic001G008500--Sobic002G423500 Sobic001G008500--Sobic001G371100 Sobic001G530800--Sobic004G047200 Sobic001G530800--Sobic001G214900 Sobic001G026600 Sobic001G026600 Sobic001G530800--Sobic001G026600 Sobic001G530800--Sobic001G371100 Sobic009G234400 Sobic009G234400 Sobic001G530800--Sobic009G234400 Sobic001G530800--Sobic002G423500 Sobic002G054000 Sobic002G054000 Sobic001G530800--Sobic002G054000 Sobic001G196100 Sobic001G196100 Sobic001G530800--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic001G530800--Sobic010G277000
Octagon: transcription factors


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