Gene annotation
Transcriptome id Sobic.004G358900.1
Synonym Sb04g038560, ATSLY1
Functional annotation Sec1 family transport protein, putative, expressed
UniProt C5XWT6
Pfam PF00995
Panther DB PTHR11679 PTHR11679:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006904vesicle docking involved in exocytosis


Orthologs (automatic annotation)
TAIR AT2G17980 : Sec1/munc18-like (SM) proteins superfamily
RAP-DB (Rice) LOC_Os03g42320.1 : Sec1 family transport protein, putative, expressed
MaizeGDB (Corn) Zm00025a004028 , Zm00025a032695
Brachypodium KQJ85002
Barley HORVU5Hr1G009740.1 , HORVU5Hr1G009740.5 , HORVU5Hr1G009740.4 , HORVU5Hr1G009740.3 , HORVU5Hr1G009740.2
Wheat TraesCS5B02G039900 , TraesCS5D02G045800 , TraesCS5A02G038500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G120500 golgi transport complex protein-related, putative, expressed -
2 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
3 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
4 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
5 Sobic.003G062400 PHD finger protein, putative, expressed -
6 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
7 Sobic.001G205900 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
8 Sobic.006G265600 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
9 Sobic.002G223800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
10 Sobic.005G155100 OsWAK98 - OsWAK receptor-like cytoplasmic kinase OsWAK-RLCK, expressed -
11 Sobic.006G041100 nuclear transport factor 2, putative, expressed -
12 Sobic.004G331900 transmembrane 9 superfamily member, putative, expressed -
13 Sobic.010G232900 surp module family protein, putative, expressed -
14 Sobic.003G253400 expressed protein -
15 Sobic.002G357900 expressed protein -
16 Sobic.003G240700 peptidase S8 and S53, subtilisin, kexin, sedolisin, putative, expressed -
17 Sobic.001G526300 WD repeat-containing protein, putative, expressed K03364: cell division cycle 20-like protein 1, cofactor of APC complex
18 Sobic.001G490500 conserved oligomeric Golgi complex component 4, related, putative, expressed -
19 Sobic.003G150900 protein transport protein-related, putative, expressed -
20 Sobic.005G040900 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin


Gene co-expression network
sample Sobic004G358900 Sobic004G358900 Sobic009G120500 Sobic009G120500 Sobic004G358900--Sobic009G120500 Sobic003G005900 Sobic003G005900 Sobic004G358900--Sobic003G005900 Sobic008G125000 Sobic008G125000 Sobic004G358900--Sobic008G125000 Sobic003G348200 Sobic003G348200 Sobic004G358900--Sobic003G348200 Sobic003G062400 Sobic003G062400 Sobic004G358900--Sobic003G062400 Sobic004G277400 Sobic004G277400 Sobic004G358900--Sobic004G277400 Sobic001G205900 Sobic001G205900 Sobic004G358900--Sobic001G205900 Sobic006G265600 Sobic006G265600 Sobic004G358900--Sobic006G265600 Sobic002G223800 Sobic002G223800 Sobic004G358900--Sobic002G223800 Sobic001G117800 Sobic001G117800 Sobic009G120500--Sobic001G117800 Sobic003G240700 Sobic003G240700 Sobic009G120500--Sobic003G240700 Sobic003G314700 Sobic003G314700 Sobic009G120500--Sobic003G314700 Sobic001G474400 Sobic001G474400 Sobic009G120500--Sobic001G474400 Sobic009G120500--Sobic006G265600 Sobic003G029600 Sobic003G029600 Sobic009G120500--Sobic003G029600 Sobic009G120500--Sobic004G358900 Sobic005G059500 Sobic005G059500 Sobic009G120500--Sobic005G059500 Sobic001G449900 Sobic001G449900 Sobic009G120500--Sobic001G449900 Sobic005G114500 Sobic005G114500 Sobic003G005900--Sobic005G114500 Sobic003G130900 Sobic003G130900 Sobic003G005900--Sobic003G130900 Sobic003G005900--Sobic006G265600 Sobic003G293000 Sobic003G293000 Sobic003G005900--Sobic003G293000 Sobic003G005900--Sobic001G474400 Sobic004G151200 Sobic004G151200 Sobic003G005900--Sobic004G151200 Sobic001G012900 Sobic001G012900 Sobic003G005900--Sobic001G012900 Sobic002G014800 Sobic002G014800 Sobic003G005900--Sobic002G014800 Sobic009G207200 Sobic009G207200 Sobic003G005900--Sobic009G207200 Sobic009G056300 Sobic009G056300 Sobic008G125000--Sobic009G056300 Sobic001G115500 Sobic001G115500 Sobic008G125000--Sobic001G115500 Sobic006G245700 Sobic006G245700 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic004G075200 Sobic004G075200 Sobic008G125000--Sobic004G075200 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic008G125000--Sobic004G358900 Sobic004G331900 Sobic004G331900 Sobic003G348200--Sobic004G331900 Sobic004G184000 Sobic004G184000 Sobic003G348200--Sobic004G184000 Sobic001G196100 Sobic001G196100 Sobic003G348200--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic003G348200--Sobic010G277000 Sobic001G542900 Sobic001G542900 Sobic003G348200--Sobic001G542900 Sobic001G116000 Sobic001G116000 Sobic003G348200--Sobic001G116000 Sobic009G187600 Sobic009G187600 Sobic003G348200--Sobic009G187600 Sobic003G424300 Sobic003G424300 Sobic003G348200--Sobic003G424300 Sobic003G348200--Sobic004G358900 Sobic003G253400 Sobic003G253400 Sobic003G062400--Sobic003G253400 Sobic008G160500 Sobic008G160500 Sobic003G062400--Sobic008G160500 Sobic004G145600 Sobic004G145600 Sobic003G062400--Sobic004G145600 Sobic003G038600 Sobic003G038600 Sobic003G062400--Sobic003G038600 Sobic001G005600 Sobic001G005600 Sobic003G062400--Sobic001G005600 Sobic004G068500 Sobic004G068500 Sobic003G062400--Sobic004G068500 Sobic009G125000 Sobic009G125000 Sobic003G062400--Sobic009G125000 Sobic002G267400 Sobic002G267400 Sobic003G062400--Sobic002G267400 Sobic002G357900 Sobic002G357900 Sobic003G062400--Sobic002G357900 Sobic004G277400--Sobic004G151200 Sobic004G277400--Sobic006G265600 Sobic004G277400--Sobic005G114500 Sobic001G191900 Sobic001G191900 Sobic004G277400--Sobic001G191900 Sobic003G360300 Sobic003G360300 Sobic004G277400--Sobic003G360300 Sobic007G051400 Sobic007G051400 Sobic004G277400--Sobic007G051400 Sobic003G222700 Sobic003G222700 Sobic004G277400--Sobic003G222700 Sobic004G277400--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic004G277400--Sobic001G151600 Sobic001G205900--Sobic003G005900 Sobic001G205900--Sobic003G062400 Sobic010G059700 Sobic010G059700 Sobic001G205900--Sobic010G059700 Sobic001G205900--Sobic004G358900 Sobic008G129600 Sobic008G129600 Sobic001G205900--Sobic008G129600 Sobic004G256300 Sobic004G256300 Sobic001G205900--Sobic004G256300 Sobic001G205900--Sobic003G222700 Sobic002G297600 Sobic002G297600 Sobic001G205900--Sobic002G297600 Sobic007G036800 Sobic007G036800 Sobic001G205900--Sobic007G036800 Sobic003G397900 Sobic003G397900 Sobic006G265600--Sobic003G397900 Sobic006G265600--Sobic001G474400 Sobic002G399900 Sobic002G399900 Sobic006G265600--Sobic002G399900 Sobic006G265600--Sobic003G005900 Sobic006G265600--Sobic001G151600 Sobic002G075900 Sobic002G075900 Sobic006G265600--Sobic002G075900 Sobic002G160700 Sobic002G160700 Sobic006G265600--Sobic002G160700 Sobic006G265600--Sobic009G120500 Sobic002G364900 Sobic002G364900 Sobic006G265600--Sobic002G364900 Sobic009G159000 Sobic009G159000 Sobic002G223800--Sobic009G159000 Sobic002G223800--Sobic003G253400 Sobic001G042200 Sobic001G042200 Sobic002G223800--Sobic001G042200 Sobic002G223800--Sobic003G062400 Sobic002G223800--Sobic004G358900 Sobic005G040900 Sobic005G040900 Sobic002G223800--Sobic005G040900 Sobic009G045200 Sobic009G045200 Sobic002G223800--Sobic009G045200 Sobic006G281700 Sobic006G281700 Sobic002G223800--Sobic006G281700 Sobic008G058800 Sobic008G058800 Sobic002G223800--Sobic008G058800
Octagon: transcription factors


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