Gene annotation
Transcriptome id Sobic.001G205900.1,Sobic.001G205900.2
Synonym Sb01g018200
Functional annotation oxidoreductase, putative, expressed
UniProt C5WXA6 , A0A1Z5S753
Pfam PF13640
Panther DB PTHR10869 PTHR10869:SF81
NCBI CDD -
KEGG Orthology K00472; prolyl 4-hydroxylase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT1G20270 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os10g35470.1 : oxidoreductase, putative, expressed
MaizeGDB (Corn) Zm00025a006459
Brachypodium KQJ97296
Barley HORVU1Hr1G044710.3 , HORVU1Hr1G044710.2 , HORVU1Hr1G044710.1 , HORVU1Hr1G044710.7 , HORVU1Hr1G044710.6 , HORVU1Hr1G044710.5 , HORVU1Hr1G044710.4
Wheat TraesCS1B02G186400 , TraesCS1A02G170900 , TraesCS1D02G168600 , TraesCS1D02G168600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
2 Sobic.003G062400 PHD finger protein, putative, expressed -
3 Sobic.010G059700 galactosyltransferase family protein, putative, expressed -
4 Sobic.004G358900 Sec1 family transport protein, putative, expressed -
5 Sobic.008G129600 glucosidase II beta subunit-like domain containing protein, expressed K10088: protein OS-9
6 Sobic.004G256300 RNA polymerase Rpb4, putative, expressed K03012: RPB4, DNA-directed RNA polymerase II subunit RPB4
7 Sobic.003G222700 similar to DEAD-box ATP-dependent RNA helicase 26(PubMedID : 29862293)@- K17679: ATP-dependent RNA helicase MSS116, mitochondrial
8 Sobic.002G297600 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
9 Sobic.007G036800 xylosyltransferase, putative, expressed -
10 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
11 Sobic.002G223800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
12 Sobic.003G253400 expressed protein -
13 Sobic.004G129500 expressed protein -
14 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
15 Sobic.002G357900 expressed protein -
16 Sobic.008G013300 expressed protein -
17 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
18 Sobic.001G135500 HECT-domain domain containing protein, expressed K10588: ubiquitin-protein ligase E3 B
19 Sobic.004G145600 expressed protein -
20 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta


Gene co-expression network
sample Sobic001G205900 Sobic001G205900 Sobic003G005900 Sobic003G005900 Sobic001G205900--Sobic003G005900 Sobic003G062400 Sobic003G062400 Sobic001G205900--Sobic003G062400 Sobic010G059700 Sobic010G059700 Sobic001G205900--Sobic010G059700 Sobic004G358900 Sobic004G358900 Sobic001G205900--Sobic004G358900 Sobic008G129600 Sobic008G129600 Sobic001G205900--Sobic008G129600 Sobic004G256300 Sobic004G256300 Sobic001G205900--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic001G205900--Sobic003G222700 Sobic002G297600 Sobic002G297600 Sobic001G205900--Sobic002G297600 Sobic007G036800 Sobic007G036800 Sobic001G205900--Sobic007G036800 Sobic005G114500 Sobic005G114500 Sobic003G005900--Sobic005G114500 Sobic003G130900 Sobic003G130900 Sobic003G005900--Sobic003G130900 Sobic006G265600 Sobic006G265600 Sobic003G005900--Sobic006G265600 Sobic003G293000 Sobic003G293000 Sobic003G005900--Sobic003G293000 Sobic001G474400 Sobic001G474400 Sobic003G005900--Sobic001G474400 Sobic004G151200 Sobic004G151200 Sobic003G005900--Sobic004G151200 Sobic001G012900 Sobic001G012900 Sobic003G005900--Sobic001G012900 Sobic002G014800 Sobic002G014800 Sobic003G005900--Sobic002G014800 Sobic009G207200 Sobic009G207200 Sobic003G005900--Sobic009G207200 Sobic003G253400 Sobic003G253400 Sobic003G062400--Sobic003G253400 Sobic008G160500 Sobic008G160500 Sobic003G062400--Sobic008G160500 Sobic004G145600 Sobic004G145600 Sobic003G062400--Sobic004G145600 Sobic003G038600 Sobic003G038600 Sobic003G062400--Sobic003G038600 Sobic001G005600 Sobic001G005600 Sobic003G062400--Sobic001G005600 Sobic004G068500 Sobic004G068500 Sobic003G062400--Sobic004G068500 Sobic009G125000 Sobic009G125000 Sobic003G062400--Sobic009G125000 Sobic002G267400 Sobic002G267400 Sobic003G062400--Sobic002G267400 Sobic002G357900 Sobic002G357900 Sobic003G062400--Sobic002G357900 Sobic010G059700--Sobic007G036800 Sobic002G306600 Sobic002G306600 Sobic010G059700--Sobic002G306600 Sobic009G063800 Sobic009G063800 Sobic010G059700--Sobic009G063800 Sobic003G224300 Sobic003G224300 Sobic010G059700--Sobic003G224300 Sobic007G146600 Sobic007G146600 Sobic010G059700--Sobic007G146600 Sobic010G059700--Sobic003G222700 Sobic003G148900 Sobic003G148900 Sobic010G059700--Sobic003G148900 Sobic010G059700--Sobic004G145600 Sobic007G022700 Sobic007G022700 Sobic010G059700--Sobic007G022700 Sobic009G120500 Sobic009G120500 Sobic004G358900--Sobic009G120500 Sobic004G358900--Sobic003G005900 Sobic008G125000 Sobic008G125000 Sobic004G358900--Sobic008G125000 Sobic003G348200 Sobic003G348200 Sobic004G358900--Sobic003G348200 Sobic004G358900--Sobic003G062400 Sobic004G277400 Sobic004G277400 Sobic004G358900--Sobic004G277400 Sobic004G358900--Sobic001G205900 Sobic004G358900--Sobic006G265600 Sobic002G223800 Sobic002G223800 Sobic004G358900--Sobic002G223800 Sobic008G055900 Sobic008G055900 Sobic008G129600--Sobic008G055900 Sobic007G177300 Sobic007G177300 Sobic008G129600--Sobic007G177300 Sobic006G056200 Sobic006G056200 Sobic008G129600--Sobic006G056200 Sobic008G103300 Sobic008G103300 Sobic008G129600--Sobic008G103300 Sobic010G264000 Sobic010G264000 Sobic008G129600--Sobic010G264000 Sobic001G467100 Sobic001G467100 Sobic008G129600--Sobic001G467100 Sobic001G449900 Sobic001G449900 Sobic008G129600--Sobic001G449900 Sobic003G182300 Sobic003G182300 Sobic008G129600--Sobic003G182300 Sobic006G270600 Sobic006G270600 Sobic008G129600--Sobic006G270600 Sobic003G221500 Sobic003G221500 Sobic004G256300--Sobic003G221500 Sobic004G256300--Sobic003G222700 Sobic006G245700 Sobic006G245700 Sobic004G256300--Sobic006G245700 Sobic004G256300--Sobic007G022700 Sobic001G229300 Sobic001G229300 Sobic004G256300--Sobic001G229300 Sobic002G142700 Sobic002G142700 Sobic004G256300--Sobic002G142700 Sobic001G487100 Sobic001G487100 Sobic004G256300--Sobic001G487100 Sobic004G256300--Sobic001G467100 Sobic003G004600 Sobic003G004600 Sobic004G256300--Sobic003G004600 Sobic003G222700--Sobic004G256300 Sobic003G222700--Sobic001G467100 Sobic010G172400 Sobic010G172400 Sobic003G222700--Sobic010G172400 Sobic001G061200 Sobic001G061200 Sobic003G222700--Sobic001G061200 Sobic003G222700--Sobic007G022700 Sobic007G173700 Sobic007G173700 Sobic003G222700--Sobic007G173700 Sobic003G222700--Sobic001G229300 Sobic003G222700--Sobic002G142700 Sobic002G399900 Sobic002G399900 Sobic003G222700--Sobic002G399900 Sobic006G029400 Sobic006G029400 Sobic002G297600--Sobic006G029400 Sobic008G013300 Sobic008G013300 Sobic002G297600--Sobic008G013300 Sobic002G297600--Sobic010G059700 Sobic009G061000 Sobic009G061000 Sobic002G297600--Sobic009G061000 Sobic002G264300 Sobic002G264300 Sobic002G297600--Sobic002G264300 Sobic003G312400 Sobic003G312400 Sobic002G297600--Sobic003G312400 Sobic002G297600--Sobic003G005900 Sobic002G297600--Sobic001G205900 Sobic001G506000 Sobic001G506000 Sobic002G297600--Sobic001G506000 Sobic004G129500 Sobic004G129500 Sobic007G036800--Sobic004G129500 Sobic010G103500 Sobic010G103500 Sobic007G036800--Sobic010G103500 Sobic007G036800--Sobic004G145600 Sobic008G112100 Sobic008G112100 Sobic007G036800--Sobic008G112100 Sobic007G036800--Sobic010G059700 Sobic007G010200 Sobic007G010200 Sobic007G036800--Sobic007G010200 Sobic004G350200 Sobic004G350200 Sobic007G036800--Sobic004G350200 Sobic002G123600 Sobic002G123600 Sobic007G036800--Sobic002G123600 Sobic007G036800--Sobic004G256300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.