Gene annotation
Transcriptome id Sobic.004G331900.1
Synonym
Functional annotation transmembrane 9 superfamily member, putative, expressed
UniProt A0A194YSR2
Pfam PF02990
Panther DB PTHR10766 PTHR10766:SF54
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT5G35160 : Endomembrane protein 70 protein family
RAP-DB (Rice) LOC_Os02g55440.2 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a022486
Brachypodium KQK01166
Barley HORVU6Hr1G085870.2 , HORVU6Hr1G085870.1
Wheat -
Populus -


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cDNA sequences
Sobic.004G331900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
2 Sobic.003G327600 domain of unknown function, DUF250 domain containing protein, expressed -
3 Sobic.003G424300 Pyrroline-5-carboxylate reductase(PubMedID : 24906815)@pyrroline-5-carboxylate reductase, putative, expressed K00286: pyrroline-5-carboxylate reductase
4 Sobic.001G436100 UDP-glucuronate 4-epimerase, putative, expressed K08679: UDP-glucuronate 4-epimerase
5 Sobic.010G248000 EDR2, putative, expressed -
6 Sobic.004G151200 RNA-binding protein-like, putative, expressed -
7 Sobic.004G358900 Sec1 family transport protein, putative, expressed -
8 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
9 Sobic.004G184000 SFT2, putative, expressed -
10 Sobic.003G094600 glycosyltransferase protein, putative, expressed -
11 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
12 Sobic.009G239600 tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed -
13 Sobic.001G026600 - -
14 Sobic.007G051400 transmembrane 9 superfamily member, putative, expressed -
15 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
16 Sobic.009G182200 domain of unknown function, DUF250 domain containing protein, expressed -
17 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
18 Sobic.009G187600 methyltransferase domain containing protein, expressed -
19 Sobic.002G280900 la domain containing protein, putative, expressed K18757: la-related protein 1
20 Sobic.002G087000 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2


Gene co-expression network
sample Sobic004G331900 Sobic004G331900 Sobic003G348200 Sobic003G348200 Sobic004G331900--Sobic003G348200 Sobic003G327600 Sobic003G327600 Sobic004G331900--Sobic003G327600 Sobic003G424300 Sobic003G424300 Sobic004G331900--Sobic003G424300 Sobic001G436100 Sobic001G436100 Sobic004G331900--Sobic001G436100 Sobic010G248000 Sobic010G248000 Sobic004G331900--Sobic010G248000 Sobic004G151200 Sobic004G151200 Sobic004G331900--Sobic004G151200 Sobic004G358900 Sobic004G358900 Sobic004G331900--Sobic004G358900 Sobic001G116000 Sobic001G116000 Sobic004G331900--Sobic001G116000 Sobic004G184000 Sobic004G184000 Sobic004G331900--Sobic004G184000 Sobic003G348200--Sobic004G331900 Sobic003G348200--Sobic004G184000 Sobic001G196100 Sobic001G196100 Sobic003G348200--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic003G348200--Sobic010G277000 Sobic001G542900 Sobic001G542900 Sobic003G348200--Sobic001G542900 Sobic003G348200--Sobic001G116000 Sobic009G187600 Sobic009G187600 Sobic003G348200--Sobic009G187600 Sobic003G348200--Sobic003G424300 Sobic003G348200--Sobic004G358900 Sobic003G327600--Sobic004G331900 Sobic003G327600--Sobic003G348200 Sobic003G327600--Sobic004G151200 Sobic003G327600--Sobic003G424300 Sobic003G327600--Sobic010G248000 Sobic002G373600 Sobic002G373600 Sobic003G327600--Sobic002G373600 Sobic004G040700 Sobic004G040700 Sobic003G327600--Sobic004G040700 Sobic002G367800 Sobic002G367800 Sobic003G327600--Sobic002G367800 Sobic001G313301 Sobic001G313301 Sobic003G327600--Sobic001G313301 Sobic003G424300--Sobic004G331900 Sobic003G424300--Sobic003G348200 Sobic003G424300--Sobic003G327600 Sobic003G312400 Sobic003G312400 Sobic003G424300--Sobic003G312400 Sobic001G061900 Sobic001G061900 Sobic003G424300--Sobic001G061900 Sobic009G194200 Sobic009G194200 Sobic003G424300--Sobic009G194200 Sobic003G353400 Sobic003G353400 Sobic003G424300--Sobic003G353400 Sobic009G182200 Sobic009G182200 Sobic003G424300--Sobic009G182200 Sobic010G186500 Sobic010G186500 Sobic003G424300--Sobic010G186500 Sobic001G436100--Sobic001G116000 Sobic001G436100--Sobic001G196100 Sobic001G436100--Sobic009G194200 Sobic001G026600 Sobic001G026600 Sobic001G436100--Sobic001G026600 Sobic001G436100--Sobic004G331900 Sobic002G075500 Sobic002G075500 Sobic001G436100--Sobic002G075500 Sobic001G436100--Sobic001G313301 Sobic004G333100 Sobic004G333100 Sobic001G436100--Sobic004G333100 Sobic003G319000 Sobic003G319000 Sobic001G436100--Sobic003G319000 Sobic010G248000--Sobic004G331900 Sobic002G428600 Sobic002G428600 Sobic010G248000--Sobic002G428600 Sobic008G058200 Sobic008G058200 Sobic010G248000--Sobic008G058200 Sobic010G248000--Sobic003G348200 Sobic003G122400 Sobic003G122400 Sobic010G248000--Sobic003G122400 Sobic010G248000--Sobic009G187600 Sobic010G248000--Sobic003G327600 Sobic010G178800 Sobic010G178800 Sobic010G248000--Sobic010G178800 Sobic001G451901 Sobic001G451901 Sobic010G248000--Sobic001G451901 Sobic001G455000 Sobic001G455000 Sobic004G151200--Sobic001G455000 Sobic004G277400 Sobic004G277400 Sobic004G151200--Sobic004G277400 Sobic003G130900 Sobic003G130900 Sobic004G151200--Sobic003G130900 Sobic003G397900 Sobic003G397900 Sobic004G151200--Sobic003G397900 Sobic003G005900 Sobic003G005900 Sobic004G151200--Sobic003G005900 Sobic001G151600 Sobic001G151600 Sobic004G151200--Sobic001G151600 Sobic001G445500 Sobic001G445500 Sobic004G151200--Sobic001G445500 Sobic005G022100 Sobic005G022100 Sobic004G151200--Sobic005G022100 Sobic006G265600 Sobic006G265600 Sobic004G151200--Sobic006G265600 Sobic009G120500 Sobic009G120500 Sobic004G358900--Sobic009G120500 Sobic004G358900--Sobic003G005900 Sobic008G125000 Sobic008G125000 Sobic004G358900--Sobic008G125000 Sobic004G358900--Sobic003G348200 Sobic003G062400 Sobic003G062400 Sobic004G358900--Sobic003G062400 Sobic004G358900--Sobic004G277400 Sobic001G205900 Sobic001G205900 Sobic004G358900--Sobic001G205900 Sobic004G358900--Sobic006G265600 Sobic002G223800 Sobic002G223800 Sobic004G358900--Sobic002G223800 Sobic001G116000--Sobic001G196100 Sobic001G035400 Sobic001G035400 Sobic001G116000--Sobic001G035400 Sobic007G044400 Sobic007G044400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic001G116000--Sobic004G184000 Sobic007G165300 Sobic007G165300 Sobic004G184000--Sobic007G165300 Sobic005G129201 Sobic005G129201 Sobic004G184000--Sobic005G129201 Sobic003G326900 Sobic003G326900 Sobic004G184000--Sobic003G326900 Sobic010G258000 Sobic010G258000 Sobic004G184000--Sobic010G258000 Sobic004G184000--Sobic001G451901 Sobic004G184000--Sobic003G348200 Sobic007G217400 Sobic007G217400 Sobic004G184000--Sobic007G217400 Sobic001G110300 Sobic001G110300 Sobic004G184000--Sobic001G110300 Sobic004G184000--Sobic001G116000
Octagon: transcription factors


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