Gene annotation
Transcriptome id Sobic.002G087000.1
Synonym Sb02g007210, PBB1
Functional annotation peptidase, T1 family, putative, expressed
UniProt C5X1Y0
Pfam PF00227
Panther DB PTHR11599 PTHR11599:SF44
NCBI CDD KOG0173; 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1
KEGG Orthology K02739; 20S proteasome subunit beta 2
Gene Ontology GO:0005839; proteasome core complex GO:0004298threonine-type endopeptidase activity


Orthologs (automatic annotation)
TAIR AT3G27430 : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
RAP-DB (Rice) LOC_Os05g09490.1 : peptidase, T1 family, putative, expressed
MaizeGDB (Corn) Zm00025a041176 , Zm00025a045478
Brachypodium KQK07148
Barley HORVU1Hr1G028190.4 , HORVU1Hr1G028190.3 , HORVU1Hr1G028190.2 , HORVU1Hr1G028190.1
Wheat TraesCS1A02G122700 , TraesCS1A02G122700 , TraesCS1B02G141900 , TraesCS1B02G141900 , TraesCS1D02G123600 , TraesCS1D02G123600
Populus PNS95657


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cDNA sequences
Sobic.002G087000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
2 Sobic.002G141700 unc-50, putative, expressed -
3 Sobic.001G443200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
4 Sobic.009G234400 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
5 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
6 Sobic.007G176200 26S proteasome non-ATPase regulatory subunit 3, putative, expressed K03033: PSMD3, 26S proteasome regulatory subunit N3
7 Sobic.003G224300 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
8 Sobic.006G211800 coatomer subunit epsilon, putative, expressed K17268: coatomer subunit epsilon
9 Sobic.005G105500 expressed protein -
10 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
11 Sobic.005G184200 WD domain, G-beta repeat domain containing protein, expressed K14003: PREB, prolactin regulatory element-binding protein
12 Sobic.010G008800 defender against cell death 1, putative, expressed K12668: OST2, oligosaccharyltransferase complex subunit epsilon
13 Sobic.001G220900 adaptin ear-binding coat-associated protein 2, putative, expressed -
14 Sobic.001G214900 expressed protein -
15 Sobic.003G261800 expressed protein -
16 Sobic.006G029000 nicotiana lesion-inducing like, putative, expressed -
17 Sobic.010G277000 exosome complex exonuclease, putative, expressed K12589: RRP42, exosome complex component RRP42
18 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
19 Sobic.001G542900 uncharacterized Cys-rich domain containing protein, putative, expressed -
20 Sobic.009G164700 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A


Gene co-expression network
sample Sobic002G087000 Sobic002G087000 Sobic001G035400 Sobic001G035400 Sobic002G087000--Sobic001G035400 Sobic002G141700 Sobic002G141700 Sobic002G087000--Sobic002G141700 Sobic001G443200 Sobic001G443200 Sobic002G087000--Sobic001G443200 Sobic009G234400 Sobic009G234400 Sobic002G087000--Sobic009G234400 Sobic001G196100 Sobic001G196100 Sobic002G087000--Sobic001G196100 Sobic007G176200 Sobic007G176200 Sobic002G087000--Sobic007G176200 Sobic003G224300 Sobic003G224300 Sobic002G087000--Sobic003G224300 Sobic006G211800 Sobic006G211800 Sobic002G087000--Sobic006G211800 Sobic005G105500 Sobic005G105500 Sobic002G087000--Sobic005G105500 Sobic004G344800 Sobic004G344800 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic008G084100 Sobic008G084100 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic001G035400--Sobic002G087000 Sobic001G073600 Sobic001G073600 Sobic001G035400--Sobic001G073600 Sobic001G035400--Sobic001G443200 Sobic001G116000 Sobic001G116000 Sobic001G035400--Sobic001G116000 Sobic003G261800 Sobic003G261800 Sobic002G141700--Sobic003G261800 Sobic002G141700--Sobic001G443200 Sobic001G077900 Sobic001G077900 Sobic002G141700--Sobic001G077900 Sobic002G141700--Sobic002G087000 Sobic001G220900 Sobic001G220900 Sobic002G141700--Sobic001G220900 Sobic007G173700 Sobic007G173700 Sobic002G141700--Sobic007G173700 Sobic002G029300 Sobic002G029300 Sobic002G141700--Sobic002G029300 Sobic003G134800 Sobic003G134800 Sobic002G141700--Sobic003G134800 Sobic001G542900 Sobic001G542900 Sobic002G141700--Sobic001G542900 Sobic008G102600 Sobic008G102600 Sobic001G443200--Sobic008G102600 Sobic004G000100 Sobic004G000100 Sobic001G443200--Sobic004G000100 Sobic004G039400 Sobic004G039400 Sobic001G443200--Sobic004G039400 Sobic001G112400 Sobic001G112400 Sobic001G443200--Sobic001G112400 Sobic001G443200--Sobic004G344800 Sobic001G443200--Sobic002G141700 Sobic010G040900 Sobic010G040900 Sobic001G443200--Sobic010G040900 Sobic001G443200--Sobic001G073600 Sobic002G262200 Sobic002G262200 Sobic001G443200--Sobic002G262200 Sobic009G212300 Sobic009G212300 Sobic009G234400--Sobic009G212300 Sobic009G234400--Sobic006G211800 Sobic002G341800 Sobic002G341800 Sobic009G234400--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic009G234400--Sobic001G404100 Sobic009G234400--Sobic005G105500 Sobic003G028100 Sobic003G028100 Sobic009G234400--Sobic003G028100 Sobic001G481700 Sobic001G481700 Sobic009G234400--Sobic001G481700 Sobic006G231500 Sobic006G231500 Sobic009G234400--Sobic006G231500 Sobic009G234400--Sobic002G087000 Sobic001G196100--Sobic001G116000 Sobic007G044400 Sobic007G044400 Sobic001G196100--Sobic007G044400 Sobic001G281900 Sobic001G281900 Sobic001G196100--Sobic001G281900 Sobic001G196100--Sobic001G035400 Sobic001G418000 Sobic001G418000 Sobic001G196100--Sobic001G418000 Sobic001G196100--Sobic002G087000 Sobic003G319000 Sobic003G319000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G530800 Sobic001G530800 Sobic001G196100--Sobic001G530800 Sobic001G458700 Sobic001G458700 Sobic007G176200--Sobic001G458700 Sobic001G010700 Sobic001G010700 Sobic007G176200--Sobic001G010700 Sobic006G252200 Sobic006G252200 Sobic007G176200--Sobic006G252200 Sobic003G330500 Sobic003G330500 Sobic007G176200--Sobic003G330500 Sobic004G224900 Sobic004G224900 Sobic007G176200--Sobic004G224900 Sobic002G428200 Sobic002G428200 Sobic007G176200--Sobic002G428200 Sobic004G335000 Sobic004G335000 Sobic007G176200--Sobic004G335000 Sobic007G176200--Sobic002G341800 Sobic009G067000 Sobic009G067000 Sobic007G176200--Sobic009G067000 Sobic003G224300--Sobic001G035400 Sobic003G148900 Sobic003G148900 Sobic003G224300--Sobic003G148900 Sobic003G224300--Sobic002G087000 Sobic001G392800 Sobic001G392800 Sobic003G224300--Sobic001G392800 Sobic010G059700 Sobic010G059700 Sobic003G224300--Sobic010G059700 Sobic003G224300--Sobic009G164700 Sobic001G402600 Sobic001G402600 Sobic003G224300--Sobic001G402600 Sobic007G024200 Sobic007G024200 Sobic003G224300--Sobic007G024200 Sobic010G277000 Sobic010G277000 Sobic003G224300--Sobic010G277000 Sobic006G211800--Sobic002G428200 Sobic006G211800--Sobic007G176200 Sobic002G423800 Sobic002G423800 Sobic006G211800--Sobic002G423800 Sobic006G211800--Sobic006G252200 Sobic006G211800--Sobic005G105500 Sobic006G211800--Sobic009G234400 Sobic001G444300 Sobic001G444300 Sobic006G211800--Sobic001G444300 Sobic006G211800--Sobic001G404100 Sobic006G211800--Sobic009G212300 Sobic005G105500--Sobic001G281900 Sobic005G105500--Sobic001G458700 Sobic005G105500--Sobic002G341800 Sobic001G145500 Sobic001G145500 Sobic005G105500--Sobic001G145500 Sobic001G096100 Sobic001G096100 Sobic005G105500--Sobic001G096100 Sobic005G105500--Sobic006G211800 Sobic005G105500--Sobic007G176200 Sobic005G105500--Sobic003G330500 Sobic006G002201 Sobic006G002201 Sobic005G105500--Sobic006G002201
Octagon: transcription factors


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