Gene annotation
Transcriptome id Sobic.001G196100.1
Synonym Sb01g017250
Functional annotation src homology-3 domain protein 3, putative, expressed
UniProt C5WW80
Pfam PF14604
Panther DB PTHR10663 PTHR10663:SF188
NCBI CDD KOG1118; Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G34660 : SH3 domain-containing protein
RAP-DB (Rice) LOC_Os10g36870.1 : src homology-3 domain protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a054939 , Zm00025a006333 , Zm00025a017433
Brachypodium KQJ97402
Barley HORVU1Hr1G047180.2 , HORVU1Hr1G047180.7 , HORVU1Hr1G047180.6 , HORVU1Hr1G047180.4 , HORVU1Hr1G047180.9 , HORVU1Hr1G047180.8 , HORVU1Hr1G047180.13 , HORVU1Hr1G047180.12 , HORVU1Hr1G047180.11 , HORVU1Hr1G047180.10 , HORVU1Hr1G047180.16 , HORVU1Hr1G047180.15 , HORVU1Hr1G047180.14
Wheat TraesCS1A02G177700 , TraesCS1B02G202500 , TraesCS1D02G176200
Populus -


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cDNA sequences
Sobic.001G196100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
2 Sobic.007G044400 MSP domain containing protein, expressed -
3 Sobic.001G281900 miro, putative, expressed K07977: Arf/Sar family, other
4 Sobic.001G035400 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
5 Sobic.001G418000 NAD dependent epimerase/dehydratase family domain containing protein, expressed K12450: UDP-glucose 4,6-dehydratase
6 Sobic.002G087000 peptidase, T1 family, putative, expressed K02739: 20S proteasome subunit beta 2
7 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
8 Sobic.003G322300 expressed protein -
9 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
10 Sobic.001G026600 - -
11 Sobic.009G164700 ras-related protein, putative, expressed K07901: RAB8A, Ras-related protein Rab-8A
12 Sobic.001G096100 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
13 Sobic.002G313600 src homology-3 domain protein 3, putative, expressed -
14 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
15 Sobic.007G092100 ADP-ribosylation factor, putative, expressed K07942: ADP-ribosylation factor-like protein 1
16 Sobic.001G007600 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
17 Sobic.003G238500 -(PubMedID : 26976818)@lactate/malate dehydrogenase, putative, expressed K00026: malate dehydrogenase
18 Sobic.005G105500 expressed protein -
19 Sobic.008G093200 expressed protein -
20 Sobic.001G436100 UDP-glucuronate 4-epimerase, putative, expressed K08679: UDP-glucuronate 4-epimerase


Gene co-expression network
sample Sobic001G196100 Sobic001G196100 Sobic001G116000 Sobic001G116000 Sobic001G196100--Sobic001G116000 Sobic007G044400 Sobic007G044400 Sobic001G196100--Sobic007G044400 Sobic001G281900 Sobic001G281900 Sobic001G196100--Sobic001G281900 Sobic001G035400 Sobic001G035400 Sobic001G196100--Sobic001G035400 Sobic001G418000 Sobic001G418000 Sobic001G196100--Sobic001G418000 Sobic002G087000 Sobic002G087000 Sobic001G196100--Sobic002G087000 Sobic003G319000 Sobic003G319000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G530800 Sobic001G530800 Sobic001G196100--Sobic001G530800 Sobic001G116000--Sobic001G196100 Sobic001G116000--Sobic001G035400 Sobic001G116000--Sobic007G044400 Sobic007G048700 Sobic007G048700 Sobic001G116000--Sobic007G048700 Sobic002G313600 Sobic002G313600 Sobic001G116000--Sobic002G313600 Sobic008G084100 Sobic008G084100 Sobic001G116000--Sobic008G084100 Sobic001G026600 Sobic001G026600 Sobic001G116000--Sobic001G026600 Sobic004G031800 Sobic004G031800 Sobic001G116000--Sobic004G031800 Sobic004G184000 Sobic004G184000 Sobic001G116000--Sobic004G184000 Sobic007G044400--Sobic001G196100 Sobic009G189200 Sobic009G189200 Sobic007G044400--Sobic009G189200 Sobic007G044400--Sobic001G116000 Sobic007G044400--Sobic001G026600 Sobic007G044400--Sobic002G313600 Sobic006G102900 Sobic006G102900 Sobic007G044400--Sobic006G102900 Sobic009G059500 Sobic009G059500 Sobic007G044400--Sobic009G059500 Sobic002G186900 Sobic002G186900 Sobic007G044400--Sobic002G186900 Sobic007G183800 Sobic007G183800 Sobic007G044400--Sobic007G183800 Sobic003G330500 Sobic003G330500 Sobic001G281900--Sobic003G330500 Sobic005G105500 Sobic005G105500 Sobic001G281900--Sobic005G105500 Sobic008G150300 Sobic008G150300 Sobic001G281900--Sobic008G150300 Sobic006G252200 Sobic006G252200 Sobic001G281900--Sobic006G252200 Sobic001G281900--Sobic001G196100 Sobic001G458700 Sobic001G458700 Sobic001G281900--Sobic001G458700 Sobic007G176200 Sobic007G176200 Sobic001G281900--Sobic007G176200 Sobic001G338400 Sobic001G338400 Sobic001G281900--Sobic001G338400 Sobic001G096100 Sobic001G096100 Sobic001G281900--Sobic001G096100 Sobic004G344800 Sobic004G344800 Sobic001G035400--Sobic004G344800 Sobic006G203900 Sobic006G203900 Sobic001G035400--Sobic006G203900 Sobic001G035400--Sobic008G084100 Sobic007G092100 Sobic007G092100 Sobic001G035400--Sobic007G092100 Sobic009G164700 Sobic009G164700 Sobic001G035400--Sobic009G164700 Sobic001G035400--Sobic002G087000 Sobic001G073600 Sobic001G073600 Sobic001G035400--Sobic001G073600 Sobic001G443200 Sobic001G443200 Sobic001G035400--Sobic001G443200 Sobic001G035400--Sobic001G116000 Sobic001G418000--Sobic001G196100 Sobic003G096000 Sobic003G096000 Sobic001G418000--Sobic003G096000 Sobic010G089500 Sobic010G089500 Sobic001G418000--Sobic010G089500 Sobic002G159900 Sobic002G159900 Sobic001G418000--Sobic002G159900 Sobic001G418000--Sobic007G044400 Sobic006G156000 Sobic006G156000 Sobic001G418000--Sobic006G156000 Sobic001G418000--Sobic003G319000 Sobic003G084300 Sobic003G084300 Sobic001G418000--Sobic003G084300 Sobic002G128800 Sobic002G128800 Sobic001G418000--Sobic002G128800 Sobic002G087000--Sobic001G035400 Sobic002G141700 Sobic002G141700 Sobic002G087000--Sobic002G141700 Sobic002G087000--Sobic001G443200 Sobic009G234400 Sobic009G234400 Sobic002G087000--Sobic009G234400 Sobic002G087000--Sobic001G196100 Sobic002G087000--Sobic007G176200 Sobic003G224300 Sobic003G224300 Sobic002G087000--Sobic003G224300 Sobic006G211800 Sobic006G211800 Sobic002G087000--Sobic006G211800 Sobic002G087000--Sobic005G105500 Sobic003G319000--Sobic001G196100 Sobic003G092700 Sobic003G092700 Sobic003G319000--Sobic003G092700 Sobic009G182200 Sobic009G182200 Sobic003G319000--Sobic009G182200 Sobic003G319000--Sobic001G026600 Sobic003G252900 Sobic003G252900 Sobic003G319000--Sobic003G252900 Sobic003G312400 Sobic003G312400 Sobic003G319000--Sobic003G312400 Sobic003G319000--Sobic001G418000 Sobic003G410400 Sobic003G410400 Sobic003G319000--Sobic003G410400 Sobic003G023500 Sobic003G023500 Sobic003G319000--Sobic003G023500 Sobic003G238500 Sobic003G238500 Sobic003G322300--Sobic003G238500 Sobic001G286200 Sobic001G286200 Sobic003G322300--Sobic001G286200 Sobic009G001900 Sobic009G001900 Sobic003G322300--Sobic009G001900 Sobic002G395000 Sobic002G395000 Sobic003G322300--Sobic002G395000 Sobic003G322300--Sobic006G203900 Sobic002G078300 Sobic002G078300 Sobic003G322300--Sobic002G078300 Sobic002G296200 Sobic002G296200 Sobic003G322300--Sobic002G296200 Sobic002G180300 Sobic002G180300 Sobic003G322300--Sobic002G180300 Sobic002G356400 Sobic002G356400 Sobic003G322300--Sobic002G356400 Sobic004G047200 Sobic004G047200 Sobic001G530800--Sobic004G047200 Sobic001G214900 Sobic001G214900 Sobic001G530800--Sobic001G214900 Sobic001G530800--Sobic001G026600 Sobic001G371100 Sobic001G371100 Sobic001G530800--Sobic001G371100 Sobic001G530800--Sobic009G234400 Sobic002G423500 Sobic002G423500 Sobic001G530800--Sobic002G423500 Sobic002G054000 Sobic002G054000 Sobic001G530800--Sobic002G054000 Sobic001G530800--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic001G530800--Sobic010G277000
Octagon: transcription factors


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