Gene annotation
Transcriptome id Sobic.001G418000.2,Sobic.001G418000.1
Synonym ATRHM1, RHM1, ROL1, Sb01g039340
Functional annotation NAD dependent epimerase/dehydratase family domain containing protein, expressed
UniProt C5WPD7
Pfam PF01073 PF01370
Panther DB PTHR10366 PTHR10366:SF385
NCBI CDD -
KEGG Orthology K12450; UDP-glucose 4,6-dehydratase
Gene Ontology GO:0016616; oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor GO:0006694steroid biosynthetic process GO:00038543-beta-hydroxy-delta5-steroid dehydrogenase activity GO:0003824catalytic activity


Orthologs (automatic annotation)
TAIR AT1G78570 : rhamnose biosynthesis 1
RAP-DB (Rice) LOC_Os03g17000.2 : NAD dependent epimerase/dehydratase family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001874 , Zm00025a052743
Brachypodium -
Barley HORVU4Hr1G059120.3 , HORVU4Hr1G059120.2 , HORVU4Hr1G059120.1 , HORVU4Hr1G059120.5 , HORVU4Hr1G059120.4
Wheat TraesCS4B02G205100 , TraesCS4B02G205100 , TraesCS4B02G205100 , TraesCS4D02G206000 , TraesCS4A02G099200
Populus -


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cDNA sequences
Sobic.001G418000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G196100 src homology-3 domain protein 3, putative, expressed -
2 Sobic.003G096000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fructose-bisphospate aldolase isozyme, putative, expressed K01623: fructose-bisphosphate aldolase, class I
3 Sobic.010G089500 annexin, putative, expressed -
4 Sobic.002G159900 -(PubMedID : 26976818)@phosphate/phosphate translocator, putative, expressed K15283: solute carrier family 35, member E1
5 Sobic.007G044400 MSP domain containing protein, expressed -
6 Sobic.006G156000 ferredoxin-thioredoxin reductase, variable chain, putative, expressed -
7 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
8 Sobic.003G084300 mediator of RNA polymerase II transcription subunit 22, putative, expressed K15139: mediator of RNA polymerase II transcription subunit 22
9 Sobic.002G128800 fiber protein Fb34, putative, expressed -
10 Sobic.004G056400 glyceraldehyde-3-phosphate dehydrogenase, putative, expressed K00134: GAPDH, glyceraldehyde 3-phosphate dehydrogenase
11 Sobic.003G290000 6-phosphofructokinase, putative, expressed K00850: pfkA, 6-phosphofructokinase 1
12 Sobic.001G505500 ankyrin repeat domain containing protein, expressed -
13 Sobic.001G513500 ribosomal protein L7Ae, putative, expressed K12845: SNU13, U4/U6 small nuclear ribonucleoprotein SNU13
14 Sobic.001G026600 - -
15 Sobic.009G179100 ribosomal protein L7Ae, putative, expressed K02908: RP-L30e, large subunit ribosomal protein L30e
16 Sobic.001G030300 mitochondrial import inner membrane translocase subunit Tim, putative, expressed K17778: mitochondrial import inner membrane translocase subunit TIM10
17 Sobic.002G186900 enolase, putative, expressed K01689: ENO, enolase
18 Sobic.006G216600 ribosomal protein L3, putative, expressed K02925: RP-L3e, large subunit ribosomal protein L3e
19 Sobic.003G322300 expressed protein -
20 Sobic.003G443300 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed -


Gene co-expression network
sample Sobic001G418000 Sobic001G418000 Sobic001G196100 Sobic001G196100 Sobic001G418000--Sobic001G196100 Sobic003G096000 Sobic003G096000 Sobic001G418000--Sobic003G096000 Sobic010G089500 Sobic010G089500 Sobic001G418000--Sobic010G089500 Sobic002G159900 Sobic002G159900 Sobic001G418000--Sobic002G159900 Sobic007G044400 Sobic007G044400 Sobic001G418000--Sobic007G044400 Sobic006G156000 Sobic006G156000 Sobic001G418000--Sobic006G156000 Sobic003G319000 Sobic003G319000 Sobic001G418000--Sobic003G319000 Sobic003G084300 Sobic003G084300 Sobic001G418000--Sobic003G084300 Sobic002G128800 Sobic002G128800 Sobic001G418000--Sobic002G128800 Sobic001G116000 Sobic001G116000 Sobic001G196100--Sobic001G116000 Sobic001G196100--Sobic007G044400 Sobic001G281900 Sobic001G281900 Sobic001G196100--Sobic001G281900 Sobic001G035400 Sobic001G035400 Sobic001G196100--Sobic001G035400 Sobic001G196100--Sobic001G418000 Sobic002G087000 Sobic002G087000 Sobic001G196100--Sobic002G087000 Sobic001G196100--Sobic003G319000 Sobic003G322300 Sobic003G322300 Sobic001G196100--Sobic003G322300 Sobic001G530800 Sobic001G530800 Sobic001G196100--Sobic001G530800 Sobic004G056400 Sobic004G056400 Sobic003G096000--Sobic004G056400 Sobic003G096000--Sobic010G089500 Sobic001G350600 Sobic001G350600 Sobic003G096000--Sobic001G350600 Sobic010G101600 Sobic010G101600 Sobic003G096000--Sobic010G101600 Sobic002G356400 Sobic002G356400 Sobic003G096000--Sobic002G356400 Sobic001G030300 Sobic001G030300 Sobic003G096000--Sobic001G030300 Sobic002G180300 Sobic002G180300 Sobic003G096000--Sobic002G180300 Sobic006G013000 Sobic006G013000 Sobic003G096000--Sobic006G013000 Sobic001G047800 Sobic001G047800 Sobic003G096000--Sobic001G047800 Sobic010G089500--Sobic010G101600 Sobic010G089500--Sobic003G096000 Sobic010G089500--Sobic004G056400 Sobic002G186900 Sobic002G186900 Sobic010G089500--Sobic002G186900 Sobic002G395000 Sobic002G395000 Sobic010G089500--Sobic002G395000 Sobic001G501600 Sobic001G501600 Sobic010G089500--Sobic001G501600 Sobic009G111400 Sobic009G111400 Sobic010G089500--Sobic009G111400 Sobic003G289601 Sobic003G289601 Sobic010G089500--Sobic003G289601 Sobic001G370700 Sobic001G370700 Sobic010G089500--Sobic001G370700 Sobic002G159900--Sobic010G089500 Sobic002G159900--Sobic004G056400 Sobic002G159900--Sobic002G186900 Sobic002G159900--Sobic001G418000 Sobic002G159900--Sobic003G096000 Sobic001G410200 Sobic001G410200 Sobic002G159900--Sobic001G410200 Sobic001G173300 Sobic001G173300 Sobic002G159900--Sobic001G173300 Sobic004G297300 Sobic004G297300 Sobic002G159900--Sobic004G297300 Sobic010G065900 Sobic010G065900 Sobic002G159900--Sobic010G065900 Sobic007G044400--Sobic001G196100 Sobic009G189200 Sobic009G189200 Sobic007G044400--Sobic009G189200 Sobic007G044400--Sobic001G116000 Sobic001G026600 Sobic001G026600 Sobic007G044400--Sobic001G026600 Sobic002G313600 Sobic002G313600 Sobic007G044400--Sobic002G313600 Sobic006G102900 Sobic006G102900 Sobic007G044400--Sobic006G102900 Sobic009G059500 Sobic009G059500 Sobic007G044400--Sobic009G059500 Sobic007G044400--Sobic002G186900 Sobic007G183800 Sobic007G183800 Sobic007G044400--Sobic007G183800 Sobic003G443300 Sobic003G443300 Sobic006G156000--Sobic003G443300 Sobic001G432000 Sobic001G432000 Sobic006G156000--Sobic001G432000 Sobic005G168100 Sobic005G168100 Sobic006G156000--Sobic005G168100 Sobic003G219800 Sobic003G219800 Sobic006G156000--Sobic003G219800 Sobic001G084100 Sobic001G084100 Sobic006G156000--Sobic001G084100 Sobic001G304400 Sobic001G304400 Sobic006G156000--Sobic001G304400 Sobic009G212200 Sobic009G212200 Sobic006G156000--Sobic009G212200 Sobic002G361700 Sobic002G361700 Sobic006G156000--Sobic002G361700 Sobic001G040100 Sobic001G040100 Sobic006G156000--Sobic001G040100 Sobic003G319000--Sobic001G196100 Sobic003G092700 Sobic003G092700 Sobic003G319000--Sobic003G092700 Sobic009G182200 Sobic009G182200 Sobic003G319000--Sobic009G182200 Sobic003G319000--Sobic001G026600 Sobic003G252900 Sobic003G252900 Sobic003G319000--Sobic003G252900 Sobic003G312400 Sobic003G312400 Sobic003G319000--Sobic003G312400 Sobic003G319000--Sobic001G418000 Sobic003G410400 Sobic003G410400 Sobic003G319000--Sobic003G410400 Sobic003G023500 Sobic003G023500 Sobic003G319000--Sobic003G023500 Sobic001G157800 Sobic001G157800 Sobic003G084300--Sobic001G157800 Sobic009G165500 Sobic009G165500 Sobic003G084300--Sobic009G165500 Sobic003G084300--Sobic009G189200 Sobic003G011100 Sobic003G011100 Sobic003G084300--Sobic003G011100 Sobic002G385400 Sobic002G385400 Sobic003G084300--Sobic002G385400 Sobic010G265900 Sobic010G265900 Sobic003G084300--Sobic010G265900 Sobic002G258300 Sobic002G258300 Sobic003G084300--Sobic002G258300 Sobic006G200000 Sobic006G200000 Sobic003G084300--Sobic006G200000 Sobic003G084300--Sobic006G102900 Sobic002G252000 Sobic002G252000 Sobic002G128800--Sobic002G252000 Sobic007G150800 Sobic007G150800 Sobic002G128800--Sobic007G150800 Sobic001G418100 Sobic001G418100 Sobic002G128800--Sobic001G418100 Sobic002G396400 Sobic002G396400 Sobic002G128800--Sobic002G396400 Sobic001G475500 Sobic001G475500 Sobic002G128800--Sobic001G475500 Sobic010G052200 Sobic010G052200 Sobic002G128800--Sobic010G052200 Sobic002G128800--Sobic006G156000 Sobic002G128800--Sobic003G219800 Sobic002G128800--Sobic003G443300
Octagon: transcription factors


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