Gene annotation
Transcriptome id Sobic.003G424300.1
Synonym AT-P5R, AT-P5C1, P5CR, EMB2772, Sb03g045690
Functional annotation Pyrroline-5-carboxylate reductase (PubMedID : 24906815)
pyrroline-5-carboxylate reductase, putative, expressed
UniProt C5XHU2
Pfam PF03807 PF14748
Panther DB PTHR11645 PTHR11645:SF28
NCBI CDD KOG3124; Pyrroline-5-carboxylate reductase
KEGG Orthology K00286; pyrroline-5-carboxylate reductase
Gene Ontology GO:0006561; proline biosynthetic process GO:0004735pyrroline-5-carboxylate reductase activity


Orthologs (automatic annotation)
TAIR AT5G14800 : pyrroline-5- carboxylate (P5C) reductase
RAP-DB (Rice) LOC_Os01g71990.1 : pyrroline-5-carboxylate reductase, putative, expressed
MaizeGDB (Corn) Zm00025a026015
Brachypodium KQK11539
Barley HORVU3Hr1G106720.3 , HORVU3Hr1G106720.2 , HORVU3Hr1G106720.5 , HORVU3Hr1G106720.4 , HORVU3Hr1G106720.6 , HORVU3Hr1G106720.1
Wheat TraesCS3D02G483400 , TraesCS3B02G538100 , TraesCS2B02G537900
Populus -


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cDNA sequences
Sobic.003G424300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G331900 transmembrane 9 superfamily member, putative, expressed -
2 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
3 Sobic.003G327600 domain of unknown function, DUF250 domain containing protein, expressed -
4 Sobic.003G312400 dymeclin, putative, expressed -
5 Sobic.001G061900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
6 Sobic.009G194200 CSLC7 - cellulose synthase-like family C, expressed -
7 Sobic.003G353400 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
8 Sobic.009G182200 domain of unknown function, DUF250 domain containing protein, expressed -
9 Sobic.010G186500 targeting protein for Xklp2, putative, expressed -
10 Sobic.008G058200 pectate lyase family protein, expressed K01728: pectate lyase
11 Sobic.007G036800 xylosyltransferase, putative, expressed -
12 Sobic.010G252900 methyl-binding domain protein MBD, putative, expressed -
13 Sobic.003G094600 glycosyltransferase protein, putative, expressed -
14 Sobic.003G420600 expressed protein -
15 Sobic.009G187600 methyltransferase domain containing protein, expressed -
16 Sobic.001G116000 dynamin family protein, putative, expressed K01528: dynamin 1/3
17 Sobic.001G217300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment"(PubMedID : 20499123)@auxin response factor 18, putative, expressed -
18 Sobic.003G356300 cadmium tolerance factor, putative, expressed -
19 Sobic.008G112100 Phospholipid synthesis protein 1 PLS1 (Zm)(PubMedID : 27208977)@acyltransferase, putative, expressed K13523: lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase
20 Sobic.001G192700 major facilitator superfamily domain-containing protein 5, putative, expressed -


Gene co-expression network
sample Sobic003G424300 Sobic003G424300 Sobic004G331900 Sobic004G331900 Sobic003G424300--Sobic004G331900 Sobic003G348200 Sobic003G348200 Sobic003G424300--Sobic003G348200 Sobic003G327600 Sobic003G327600 Sobic003G424300--Sobic003G327600 Sobic003G312400 Sobic003G312400 Sobic003G424300--Sobic003G312400 Sobic001G061900 Sobic001G061900 Sobic003G424300--Sobic001G061900 Sobic009G194200 Sobic009G194200 Sobic003G424300--Sobic009G194200 Sobic003G353400 Sobic003G353400 Sobic003G424300--Sobic003G353400 Sobic009G182200 Sobic009G182200 Sobic003G424300--Sobic009G182200 Sobic010G186500 Sobic010G186500 Sobic003G424300--Sobic010G186500 Sobic004G331900--Sobic003G348200 Sobic004G331900--Sobic003G327600 Sobic004G331900--Sobic003G424300 Sobic001G436100 Sobic001G436100 Sobic004G331900--Sobic001G436100 Sobic010G248000 Sobic010G248000 Sobic004G331900--Sobic010G248000 Sobic004G151200 Sobic004G151200 Sobic004G331900--Sobic004G151200 Sobic004G358900 Sobic004G358900 Sobic004G331900--Sobic004G358900 Sobic001G116000 Sobic001G116000 Sobic004G331900--Sobic001G116000 Sobic004G184000 Sobic004G184000 Sobic004G331900--Sobic004G184000 Sobic003G348200--Sobic004G331900 Sobic003G348200--Sobic004G184000 Sobic001G196100 Sobic001G196100 Sobic003G348200--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic003G348200--Sobic010G277000 Sobic001G542900 Sobic001G542900 Sobic003G348200--Sobic001G542900 Sobic003G348200--Sobic001G116000 Sobic009G187600 Sobic009G187600 Sobic003G348200--Sobic009G187600 Sobic003G348200--Sobic003G424300 Sobic003G348200--Sobic004G358900 Sobic003G327600--Sobic004G331900 Sobic003G327600--Sobic003G348200 Sobic003G327600--Sobic004G151200 Sobic003G327600--Sobic003G424300 Sobic003G327600--Sobic010G248000 Sobic002G373600 Sobic002G373600 Sobic003G327600--Sobic002G373600 Sobic004G040700 Sobic004G040700 Sobic003G327600--Sobic004G040700 Sobic002G367800 Sobic002G367800 Sobic003G327600--Sobic002G367800 Sobic001G313301 Sobic001G313301 Sobic003G327600--Sobic001G313301 Sobic003G252900 Sobic003G252900 Sobic003G312400--Sobic003G252900 Sobic003G410400 Sobic003G410400 Sobic003G312400--Sobic003G410400 Sobic003G319000 Sobic003G319000 Sobic003G312400--Sobic003G319000 Sobic004G168300 Sobic004G168300 Sobic003G312400--Sobic004G168300 Sobic003G092700 Sobic003G092700 Sobic003G312400--Sobic003G092700 Sobic010G168900 Sobic010G168900 Sobic003G312400--Sobic010G168900 Sobic006G129000 Sobic006G129000 Sobic003G312400--Sobic006G129000 Sobic010G059700 Sobic010G059700 Sobic003G312400--Sobic010G059700 Sobic002G297600 Sobic002G297600 Sobic003G312400--Sobic002G297600 Sobic001G316900 Sobic001G316900 Sobic001G061900--Sobic001G316900 Sobic010G008600 Sobic010G008600 Sobic001G061900--Sobic010G008600 Sobic001G061900--Sobic009G194200 Sobic001G321800 Sobic001G321800 Sobic001G061900--Sobic001G321800 Sobic002G068800 Sobic002G068800 Sobic001G061900--Sobic002G068800 Sobic001G515800 Sobic001G515800 Sobic001G061900--Sobic001G515800 Sobic007G223200 Sobic007G223200 Sobic001G061900--Sobic007G223200 Sobic001G061900--Sobic003G424300 Sobic001G217300 Sobic001G217300 Sobic001G061900--Sobic001G217300 Sobic009G194200--Sobic010G008600 Sobic009G194200--Sobic001G436100 Sobic004G261200 Sobic004G261200 Sobic009G194200--Sobic004G261200 Sobic003G410700 Sobic003G410700 Sobic009G194200--Sobic003G410700 Sobic009G194200--Sobic001G061900 Sobic006G242100 Sobic006G242100 Sobic009G194200--Sobic006G242100 Sobic004G262600 Sobic004G262600 Sobic009G194200--Sobic004G262600 Sobic010G101400 Sobic010G101400 Sobic009G194200--Sobic010G101400 Sobic001G038200 Sobic001G038200 Sobic009G194200--Sobic001G038200 Sobic004G337900 Sobic004G337900 Sobic003G353400--Sobic004G337900 Sobic001G099100 Sobic001G099100 Sobic003G353400--Sobic001G099100 Sobic007G225300 Sobic007G225300 Sobic003G353400--Sobic007G225300 Sobic003G353400--Sobic006G242100 Sobic009G030200 Sobic009G030200 Sobic003G353400--Sobic009G030200 Sobic007G178200 Sobic007G178200 Sobic003G353400--Sobic007G178200 Sobic003G353400--Sobic003G319000 Sobic010G050900 Sobic010G050900 Sobic003G353400--Sobic010G050900 Sobic003G353400--Sobic003G312400 Sobic009G182200--Sobic003G319000 Sobic009G171100 Sobic009G171100 Sobic009G182200--Sobic009G171100 Sobic003G217100 Sobic003G217100 Sobic009G182200--Sobic003G217100 Sobic009G182200--Sobic003G348200 Sobic010G201388 Sobic010G201388 Sobic009G182200--Sobic010G201388 Sobic001G441000 Sobic001G441000 Sobic009G182200--Sobic001G441000 Sobic004G123000 Sobic004G123000 Sobic009G182200--Sobic004G123000 Sobic003G224300 Sobic003G224300 Sobic009G182200--Sobic003G224300 Sobic006G013000 Sobic006G013000 Sobic009G182200--Sobic006G013000 Sobic010G186500--Sobic003G319000 Sobic002G418100 Sobic002G418100 Sobic010G186500--Sobic002G418100 Sobic003G009200 Sobic003G009200 Sobic010G186500--Sobic003G009200 Sobic007G051400 Sobic007G051400 Sobic010G186500--Sobic007G051400 Sobic010G186500--Sobic003G312400 Sobic006G189200 Sobic006G189200 Sobic010G186500--Sobic006G189200 Sobic002G260700 Sobic002G260700 Sobic010G186500--Sobic002G260700 Sobic001G026600 Sobic001G026600 Sobic010G186500--Sobic001G026600 Sobic010G186500--Sobic004G331900
Octagon: transcription factors


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