Gene annotation
Transcriptome id Sobic.001G217300.1
Synonym ARF16, auxin response factor, Sb01g019130, SbARF1
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by BR treatment" (PubMedID : 20499123)
auxin response factor 18, putative, expressed
UniProt C5WYD5
Pfam PF02362 PF06507
Panther DB PTHR31384 PTHR31384:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0009725response to hormone GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G30080 : auxin response factor 16
RAP-DB (Rice) LOC_Os10g33940.1 : auxin response factor 18, putative, expressed
MaizeGDB (Corn) Zm00025a017609 , Zm00025a006580 , Zm00025a018176 , Zm00025a041848
Brachypodium KQK17233 , KQJ85485 , KQJ85484 , KQJ97130 , PNT69103
Barley HORVU2Hr1G089670.1 , HORVU2Hr1G089670.2 , HORVU2Hr1G089670.3 , HORVU2Hr1G089670.4 , HORVU7Hr1G101270.8 , HORVU7Hr1G101270.2 , HORVU7Hr1G101270.3 , HORVU7Hr1G101270.1 , HORVU7Hr1G101270.6 , HORVU7Hr1G101270.7 , HORVU7Hr1G101270.4 , HORVU7Hr1G101270.5 , HORVU5Hr1G024100.1 , HORVU1Hr1G041770.1 , HORVU1Hr1G041770.6 , HORVU1Hr1G041770.4 , HORVU1Hr1G041770.5 , HORVU6Hr1G026750.1
Wheat TraesCS1A02G156600 , TraesCS1B02G173700 , TraesCS7D02G436800 , TraesCS2D02G376600 , TraesCS1D02G155100 , TraesCS2A02G380300 , TraesCS2B02G397300 , TraesCS7A02G446900 , TraesCS7B02G346700 , TraesCS7B02G346700
Populus PNT22576 , PNT18104 , PNT19000 , PNT19001 , PNT42422


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cDNA sequences
Sobic.001G217300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G163300 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@zinc finger protein-related, putative, expressed K11968: ariadne-1
2 Sobic.005G202000 expressed protein -
3 Sobic.003G031500 expressed protein -
4 Sobic.001G152600 RIO1 family protein, expressed -
5 Sobic.001G316900 bZIP family transcription factor, putative, expressed -
6 Sobic.004G262600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
7 Sobic.003G356300 cadmium tolerance factor, putative, expressed -
8 Sobic.003G223900 extra-large G-protein-related, putative, expressed -
9 Sobic.006G203400 "GS2/GL2(Ortholog in rice:Che et al., 2015(PubMedID : 31659900)@growth-regulating factor, putative, expressed -
10 Sobic.002G345800 plastocyanin-like domain containing protein, putative, expressed -
11 Sobic.004G336100 ribonucleoside-diphosphate reductase large subunit, putative, expressed K10807: ribonucleoside-diphosphate reductase subunit M1
12 Sobic.002G263000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
13 Sobic.003G410700 exostosin family domain containing protein, expressed -
14 Sobic.001G086400 OsMADS34 - MADS-box family gene with MIKCc type-box, expressed -
15 Sobic.001G061900 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
16 Sobic.002G400300 expressed protein -
17 Sobic.003G399000 expressed protein -
18 Sobic.003G207000 expressed protein -
19 Sobic.008G044600 expressed protein -
20 Sobic.003G017200 osFTL1 FT-Like1 homologous to Flowering Locus T gene@ contains Pfam profile PF01161: Phosphatidylethanolamine-binding protein, expressed K16223: protein FLOWERING LOCUS T


Gene co-expression network
sample Sobic001G217300 Sobic001G217300 Sobic001G163300 Sobic001G163300 Sobic001G217300--Sobic001G163300 Sobic005G202000 Sobic005G202000 Sobic001G217300--Sobic005G202000 Sobic003G031500 Sobic003G031500 Sobic001G217300--Sobic003G031500 Sobic001G152600 Sobic001G152600 Sobic001G217300--Sobic001G152600 Sobic001G316900 Sobic001G316900 Sobic001G217300--Sobic001G316900 Sobic004G262600 Sobic004G262600 Sobic001G217300--Sobic004G262600 Sobic003G356300 Sobic003G356300 Sobic001G217300--Sobic003G356300 Sobic003G223900 Sobic003G223900 Sobic001G217300--Sobic003G223900 Sobic006G203400 Sobic006G203400 Sobic001G217300--Sobic006G203400 Sobic001G163300--Sobic001G152600 Sobic001G163300--Sobic001G217300 Sobic003G017200 Sobic003G017200 Sobic001G163300--Sobic003G017200 Sobic001G163300--Sobic001G316900 Sobic008G010900 Sobic008G010900 Sobic001G163300--Sobic008G010900 Sobic006G200200 Sobic006G200200 Sobic001G163300--Sobic006G200200 Sobic008G094800 Sobic008G094800 Sobic001G163300--Sobic008G094800 Sobic003G144200 Sobic003G144200 Sobic001G163300--Sobic003G144200 Sobic006G017600 Sobic006G017600 Sobic001G163300--Sobic006G017600 Sobic005G202000--Sobic001G217300 Sobic005G202000--Sobic001G152600 Sobic005G172700 Sobic005G172700 Sobic005G202000--Sobic005G172700 Sobic004G149400 Sobic004G149400 Sobic005G202000--Sobic004G149400 Sobic001G137400 Sobic001G137400 Sobic005G202000--Sobic001G137400 Sobic003G022900 Sobic003G022900 Sobic005G202000--Sobic003G022900 Sobic005G202000--Sobic006G017600 Sobic007G127950 Sobic007G127950 Sobic005G202000--Sobic007G127950 Sobic003G049600 Sobic003G049600 Sobic005G202000--Sobic003G049600 Sobic001G209600 Sobic001G209600 Sobic003G031500--Sobic001G209600 Sobic003G031500--Sobic001G217300 Sobic003G153200 Sobic003G153200 Sobic003G031500--Sobic003G153200 Sobic003G031500--Sobic001G152600 Sobic001G157900 Sobic001G157900 Sobic003G031500--Sobic001G157900 Sobic005G038000 Sobic005G038000 Sobic003G031500--Sobic005G038000 Sobic003G031500--Sobic004G262600 Sobic001G086400 Sobic001G086400 Sobic003G031500--Sobic001G086400 Sobic001G061900 Sobic001G061900 Sobic003G031500--Sobic001G061900 Sobic008G161100 Sobic008G161100 Sobic001G152600--Sobic008G161100 Sobic001G152600--Sobic001G163300 Sobic001G152600--Sobic001G137400 Sobic001G152600--Sobic005G202000 Sobic003G191600 Sobic003G191600 Sobic001G152600--Sobic003G191600 Sobic003G207000 Sobic003G207000 Sobic001G152600--Sobic003G207000 Sobic001G152600--Sobic001G217300 Sobic005G166100 Sobic005G166100 Sobic001G152600--Sobic005G166100 Sobic008G098700 Sobic008G098700 Sobic001G152600--Sobic008G098700 Sobic001G316900--Sobic003G144200 Sobic001G316900--Sobic001G061900 Sobic001G316900--Sobic003G017200 Sobic009G170100 Sobic009G170100 Sobic001G316900--Sobic009G170100 Sobic006G110000 Sobic006G110000 Sobic001G316900--Sobic006G110000 Sobic002G068800 Sobic002G068800 Sobic001G316900--Sobic002G068800 Sobic001G157400 Sobic001G157400 Sobic001G316900--Sobic001G157400 Sobic009G159900 Sobic009G159900 Sobic001G316900--Sobic009G159900 Sobic009G037800 Sobic009G037800 Sobic001G316900--Sobic009G037800 Sobic003G410700 Sobic003G410700 Sobic004G262600--Sobic003G410700 Sobic004G262600--Sobic003G223900 Sobic004G261200 Sobic004G261200 Sobic004G262600--Sobic004G261200 Sobic009G188800 Sobic009G188800 Sobic004G262600--Sobic009G188800 Sobic003G399000 Sobic003G399000 Sobic004G262600--Sobic003G399000 Sobic009G194200 Sobic009G194200 Sobic004G262600--Sobic009G194200 Sobic004G262600--Sobic001G217300 Sobic001G139300 Sobic001G139300 Sobic004G262600--Sobic001G139300 Sobic004G262600--Sobic003G017200 Sobic006G215000 Sobic006G215000 Sobic003G356300--Sobic006G215000 Sobic003G356300--Sobic001G217300 Sobic002G203500 Sobic002G203500 Sobic003G356300--Sobic002G203500 Sobic003G356300--Sobic005G166100 Sobic003G356300--Sobic001G152600 Sobic003G092500 Sobic003G092500 Sobic003G356300--Sobic003G092500 Sobic005G022300 Sobic005G022300 Sobic003G356300--Sobic005G022300 Sobic001G340900 Sobic001G340900 Sobic003G356300--Sobic001G340900 Sobic001G043500 Sobic001G043500 Sobic003G356300--Sobic001G043500 Sobic003G223900--Sobic004G262600 Sobic004G234300 Sobic004G234300 Sobic003G223900--Sobic004G234300 Sobic002G270800 Sobic002G270800 Sobic003G223900--Sobic002G270800 Sobic003G223900--Sobic003G410700 Sobic003G223900--Sobic001G139300 Sobic004G336100 Sobic004G336100 Sobic003G223900--Sobic004G336100 Sobic003G223900--Sobic001G217300 Sobic003G223900--Sobic003G017200 Sobic002G257900 Sobic002G257900 Sobic003G223900--Sobic002G257900 Sobic008G044600 Sobic008G044600 Sobic006G203400--Sobic008G044600 Sobic006G022400 Sobic006G022400 Sobic006G203400--Sobic006G022400 Sobic010G013500 Sobic010G013500 Sobic006G203400--Sobic010G013500 Sobic006G022500 Sobic006G022500 Sobic006G203400--Sobic006G022500 Sobic004G132100 Sobic004G132100 Sobic006G203400--Sobic004G132100 Sobic002G427800 Sobic002G427800 Sobic006G203400--Sobic002G427800 Sobic002G105000 Sobic002G105000 Sobic006G203400--Sobic002G105000 Sobic007G046900 Sobic007G046900 Sobic006G203400--Sobic007G046900 Sobic009G239301 Sobic009G239301 Sobic006G203400--Sobic009G239301
Octagon: transcription factors


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